View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_high_6 (Length: 327)
Name: NF4407_high_6
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 22860793 - 22861122
Alignment:
| Q |
1 |
taagtcttcgagagcttccattaacctacgagacataaatccactttctgcagttttgacctgcaaaaccacaagcagtaaagaaatttatacaatggac |
100 |
Q |
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| T |
22860793 |
taagtcttctagagctttcattaatctacgagacatatatccagtgtctgcagttttgacctgcaaaaccacaagcagtaaagaaatttatacaatggac |
22860892 |
T |
|
| Q |
101 |
tccaatgtttttcgtcccagtaaa-tgataaaaaattaactaaaatgccccacaaccctaagtgaacgctccatgtttttaccactatcagtgacatttg |
199 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22860893 |
tccagtgtttttcgtcccagtaaaatgataaaaaattaactaaaattccccacaaccctaagtgaacgctccatgtttttaccactatcagtgacatttg |
22860992 |
T |
|
| Q |
200 |
catccataatatttgactttaccactatcaaccacgcttcccttctccgccgtaccttctcca--------------taacaacccccttcagaatccac |
285 |
Q |
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| T |
22860993 |
catccataatatttgactttaccactatcaaccacgcttcccttctccgccgtaccttctccagtgaagcacattcctaacaacccccttcagaatccac |
22861092 |
T |
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| Q |
286 |
caatgagccctactgtttttgctaaattca |
315 |
Q |
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| T |
22861093 |
cgctgagccctactgtttttgctaaattca |
22861122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22825038 - 22825263
Alignment:
| Q |
1 |
taagtcttcgagagcttccattaacctacgagacataaatccactttctgcagttttgacctgcaaaaccacaagcagtaaagaaatttatacaatggac |
100 |
Q |
| |
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||||||||| ||||||| |||||| |||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |
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| T |
22825038 |
taagtcttctagagctttcattaatctacgagacatatatccagtgtctgcagttttgacctgcaaaac-acaagcagtaaagaaacttataaaatggac |
22825136 |
T |
|
| Q |
101 |
tccaatgtttttcgtcccagtaaatgataaaaaattaactaaaatgccccacaaccctaagtgaacgctcc----atgtttttaccactatcagtgacat |
196 |
Q |
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| T |
22825137 |
tacaatgtttgtcgtcccggtaaatggtaaaaaattaactaagaggcccaacaaaccaaagttaacgctccatgtatgtttttaccacgatcagtgactt |
22825236 |
T |
|
| Q |
197 |
ttgcatccataatatttgactttacca |
223 |
Q |
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|||||| |||||||||||||||||| |
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| T |
22825237 |
atgcatcattaatatttgactttacca |
22825263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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