View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4407_high_9 (Length: 301)

Name: NF4407_high_9
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4407_high_9
NF4407_high_9
[»] chr2 (4 HSPs)
chr2 (171-293)||(2584268-2584390)
chr2 (217-284)||(2039837-2039904)
chr2 (237-284)||(29962266-29962313)
chr2 (40-72)||(2584137-2584169)
[»] chr7 (8 HSPs)
chr7 (171-285)||(21267068-21267182)
chr7 (171-285)||(48185783-48185897)
chr7 (217-284)||(12527903-12527970)
chr7 (217-280)||(12502269-12502332)
chr7 (210-284)||(26262392-26262466)
chr7 (210-284)||(36018723-36018797)
chr7 (217-284)||(28384885-28384952)
chr7 (222-284)||(16484798-16484860)
[»] chr8 (5 HSPs)
chr8 (217-284)||(3896461-3896528)
chr8 (214-284)||(6820331-6820401)
chr8 (1-39)||(28535193-28535231)
chr8 (217-279)||(44669722-44669784)
chr8 (250-284)||(5536306-5536340)
[»] chr1 (4 HSPs)
chr1 (217-284)||(18154050-18154117)
chr1 (217-284)||(18902779-18902846)
chr1 (1-39)||(22788469-22788507)
chr1 (1-37)||(18431722-18431758)
[»] scaffold0172 (1 HSPs)
scaffold0172 (237-284)||(33832-33879)
[»] chr3 (5 HSPs)
chr3 (217-284)||(1312273-1312340)
chr3 (1-39)||(26555476-26555514)
chr3 (217-284)||(19933565-19933632)
chr3 (5-39)||(52116824-52116858)
chr3 (217-284)||(11034143-11034209)
[»] chr6 (4 HSPs)
chr6 (215-284)||(8910876-8910944)
chr6 (217-284)||(15278677-15278743)
chr6 (216-284)||(34517003-34517071)
chr6 (1-40)||(16692961-16693000)
[»] scaffold0655 (1 HSPs)
scaffold0655 (216-280)||(8402-8466)
[»] chr4 (2 HSPs)
chr4 (238-284)||(28653654-28653700)
chr4 (250-284)||(52945670-52945704)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 2584268 - 2584390
Alignment:
Q  171 gttcttacattaaaagtataaattcttaaaaataaaacttttgaccttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaa 270  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2584268 gttcttacattaaaagtataaattcttaaaaacaaaacttttgaccttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaa 2584367  T
Q  271 gttttctcaacaagatgatgatg 293  Q
    ||||| |||||||||||| ||||    
T  2584368 gttttttcaacaagatgaagatg 2584390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 2039904 - 2039837
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||| ||||| |  |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2039904 ttttcctacctaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttctcaacaag 2039837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 29962266 - 29962313
Alignment:
Q  237 cctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||    
T  29962266 cctagctggtcaaagttctagatgcttgtgaaaagttttctcaacaag 29962313  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 2584137 - 2584169
Alignment:
Q  40 taattagcaaattcttagtccaaagatgaatat 72  Q
    |||||||||||||||||||||||||||||||||    
T  2584137 taattagcaaattcttagtccaaagatgaatat 2584169  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 21267068 - 21267182
Alignment:
Q  171 gttcttacattaaaagtataaattcttaaaaataaaacttttgaccttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaa 270  Q
    |||||||||||||||||||||||| ||||  || | || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21267068 gttcttacattaaaagtataaatttttaaggatcagacatttgaccttttcctacccaagacaaatcctagttggtcatagttgtggatgcttgtgaaaa 21267167  T
Q  271 gttttctcaacaaga 285  Q
    |||||||||||||||    
T  21267168 gttttctcaacaaga 21267182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 48185783 - 48185897
Alignment:
Q  171 gttcttacattaaaagtataaattcttaaaaataaaacttttgaccttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaa 270  Q
    ||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  48185783 gttcttacattaaaagtataaattcttaagaaccagacttttgaccttttcctacccaagacaaatcctagctggtcatagcggtggatgcttgtgaaaa 48185882  T
Q  271 gttttctcaacaaga 285  Q
    ||||||| |||||||    
T  48185883 gttttcttaacaaga 48185897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 12527903 - 12527970
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||||| | |  |||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  12527903 ttttcctacccaaggctacacctagctggtcaaagttctggatgcttgtaaaaagttttctcaacaag 12527970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 12502269 - 12502332
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaa 280  Q
    |||||||||||||||| |  |||||||||||| |||| |||||| |||| ||||||||||||||    
T  12502269 ttttcctacccaagactacacctagctggtcaaagttctggatgattgtaaaaagttttctcaa 12502332  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 26262392 - 26262466
Alignment:
Q  210 tttgaccttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||| |||||| ||||||||||| |  |||| ||||||| ||||  ||||||||||||||| |||||||||||||    
T  26262392 tttggcctttttctacccaagactacacctaactggtcaaagttccggatgcttgtgaaaatttttctcaacaag 26262466  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 36018797 - 36018723
Alignment:
Q  210 tttgaccttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||| |||||| ||||||||||| |   ||||||||||| ||||  |||||||||||||||||||| ||||||||    
T  36018797 tttggcctttttctacccaagactacatctagctggtcaaagtttcggatgcttgtgaaaagttttttcaacaag 36018723  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 28384952 - 28384885
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||| ||||||||||| |  |||| ||||||| | || ||| ||||||||||||||||||||||||||    
T  28384952 tttttctacccaagactacacctaactggtcaaaattctggttgcttgtgaaaagttttctcaacaag 28384885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 16484860 - 16484798
Alignment:
Q  222 ctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    ||||||||||  || ||||||||| |||||||  ||||||||| |||||||||||||| ||||    
T  16484860 ctacccaagaataaacctagctggccatagtttcggatgcttgcgaaaagttttctcatcaag 16484798  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 3896461 - 3896528
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||| ||||||||||| |  |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  3896461 tttttctacccaagactacacctagctggtcaaagttttggatgcttgtgaaaagttttctcaacaag 3896528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 6820401 - 6820331
Alignment:
Q  214 accttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    ||||||| |||||||| || |  |||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  6820401 acctttttctacccaacactacacctaactggtcaaagttctggatgcttgtgaaaagttttctcaacaag 6820331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28535231 - 28535193
Alignment:
Q  1 gcagctgccacaccatgtttcacactccatccgcccctg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28535231 gcagctgccacaccatgtttcacactccatccgcccctg 28535193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 44669784 - 44669722
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctca 279  Q
    |||| ||||||||||| |  |||||||||||| |||| |||||||||||||||||||||||||    
T  44669784 tttttctacccaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttctca 44669722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 5536306 - 5536340
Alignment:
Q  250 agttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||||||||||||||||| ||||||||    
T  5536306 agttgtggatgcttgtgaaaagttttttcaacaag 5536340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 18154117 - 18154050
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||||||| |  |||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  18154117 ttttcctacccaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttgtcaacaag 18154050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 18902846 - 18902779
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||||||| |  |||| |||||||  ||| |||||||||||| |||||||||||||||||    
T  18902846 ttttcctacccaagactacacctaactggtcaaggttctggatgcttgtggaaagttttctcaacaag 18902779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22788469 - 22788507
Alignment:
Q  1 gcagctgccacaccatgtttcacactccatccgcccctg 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  22788469 gcagttgccacaccatgtttcacactccatccgcccctg 22788507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18431722 - 18431758
Alignment:
Q  1 gcagctgccacaccatgtttcacactccatccgcccc 37  Q
    ||||||||||||||||||||||| || ||||||||||    
T  18431722 gcagctgccacaccatgtttcactctacatccgcccc 18431758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 33832 - 33879
Alignment:
Q  237 cctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  33832 cctagctggtcaaagttctggatgcttgtgaaaagttttctcaacaag 33879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 1312340 - 1312273
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||| ||||||||||| |  |||||||||||| |||| | ||||||||||||||||||||||||||||    
T  1312340 tttttctacccaagactacacctagctggtcaaagttctagatgcttgtgaaaagttttctcaacaag 1312273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26555514 - 26555476
Alignment:
Q  1 gcagctgccacaccatgtttcacactccatccgcccctg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26555514 gcagctgccacaccatgtttcacactccatccgcccctg 26555476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 19933632 - 19933565
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||||||| |  |||| |||||||  ||| |||||||||||||||| |||||||||||||    
T  19933632 ttttcctacccaagactacacctaactggtcaaggttctggatgcttgtgaaaatttttctcaacaag 19933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 52116858 - 52116824
Alignment:
Q  5 ctgccacaccatgtttcacactccatccgcccctg 39  Q
    |||||||||||||||||||||||||||||||||||    
T  52116858 ctgccacaccatgtttcacactccatccgcccctg 52116824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 11034143 - 11034209
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||||||||||||| |  |||| ||||||| |||| ||||| ||||||||||| ||||||||||||    
T  11034143 ttttcctacccaagactacacctaactggtcaaagttctggatacttgtgaaaag-tttctcaacaag 11034209  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 8910944 - 8910876
Alignment:
Q  215 ccttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||||| ||||||||||| || |||| |||||||||||| |||||||||| |||||||||| ||||||||    
T  8910944 cctttttctacccaagactaaacctatctggtcatagttctggatgcttgcgaaaagtttt-tcaacaag 8910876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 15278743 - 15278677
Alignment:
Q  217 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||| ||||||||||| |  |||||||||||| |||| | ||||||||||||||||||||||||||||    
T  15278743 tttttctacccaagactacacctagctggtca-agttctagatgcttgtgaaaagttttctcaacaag 15278677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 34517003 - 34517071
Alignment:
Q  216 cttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    ||||| ||||||||||| |  |||||||||||| |||   |||||| ||||||||||||||||||||||    
T  34517003 ctttttctacccaagactacacctagctggtcaaagtaccggatgcatgtgaaaagttttctcaacaag 34517071  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16693000 - 16692961
Alignment:
Q  1 gcagctgccacaccatgtttcacactccatccgcccctgt 40  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  16693000 gcagctaccacaccatgtttcacactcaatccgcccctgt 16692961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 8466 - 8402
Alignment:
Q  216 cttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttctcaa 280  Q
    ||||| ||||||||||  || |||| ||||||||||||  |||||||||||||||||||||||||    
T  8466 ctttttctacccaagagtaaacctaactggtcatagttccggatgcttgtgaaaagttttctcaa 8402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 28653654 - 28653700
Alignment:
Q  238 ctagctggtcatagttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    ||||||||||| |||| ||||||||||||||||||||| | ||||||    
T  28653654 ctagctggtcaaagttctggatgcttgtgaaaagtttttttaacaag 28653700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 52945704 - 52945670
Alignment:
Q  250 agttgtggatgcttgtgaaaagttttctcaacaag 284  Q
    |||| ||||||||||||||||||||||||||||||    
T  52945704 agttctggatgcttgtgaaaagttttctcaacaag 52945670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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