View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4407_low_1 (Length: 781)

Name: NF4407_low_1
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4407_low_1
NF4407_low_1
[»] chr5 (1 HSPs)
chr5 (20-774)||(10447687-10448449)


Alignment Details
Target: chr5 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 20 - 774
Target Start/End: Original strand, 10447687 - 10448449
Alignment:
Q  20 cctcttatgtttttaaggttctttcttcaatgtttcactctttaattgcacagattcgattccatttagaaacatgtggcttgtaatgaaagaaagcatc 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10447687 cctcttatgattttaaggttctttcttcaatgtttcactctttaattgcacagattcgattccatttagaaacatgtggcttgtaatgaaagaaagcatc 10447786  T
Q  120 ttaaacatactgtaataatttgtaagttccttttatatttcaatttgactttgatttgcttaattgtagaaaacccaattcccaatttaatatgctttgg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10447787 ttaaacatactgtaataatttgtaagttccttttatatttcaatttgactttgatttgcttaattgtagaaaacccaattcccaatttaatatgctttgg 10447886  T
Q  220 attctcaatgcttaaaaaatgttgctttctttgcttttgatgattttagagttaaatattcaacatggcttgtaaatgggtgcttcaagaataataaata 319  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10447887 attctcaatgcttaaaaattgttgctttctttgcttttgatgattttagagttaaatattcaacatggcttgtaaatgggtgcttcaagaataataaata 10447986  T
Q  320 atctattcttttttctttcttctgggtcattttgtggttttcttgttgatgaagattgcaggagtatcattatcaactg--------gtgctagtgtgct 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  10447987 atctattcttttttctttcttctgggtcattttgtggttttcttgttgatgaagattgcaggagtatcattatcaactggtgctagcgtgctagtgtgct 10448086  T
Q  412 actatcattcaatttgtaagagccctttaattttcaatgaaattggcccttcaccattcaccaaaaacagataaggatgctttttctgttggtgctattc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10448087 actatcattcaatttgtaagagccctttaattttcaatgaaattggcccttcaccattcaccaaaaacagataaggatgctttttctgttagtgctattc 10448186  T
Q  512 agttagaatcacttaacttatttttgaagttacataaaaatgttcccttttacaagttgtaagtagttaacaaccttatttatttatttattagtttttg 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10448187 agttagaatcacttaacttatttttgaagttacataaaaatgttcccttttacaagttgtaagtagttaacaaccttatttatttatttatttgtttttg 10448286  T
Q  612 gcatgtgttagtattgaagattataaacttgtatttcagtgtgtttataacactgtgaataaattaccgaggttattttggggtttgactgttacaacat 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10448287 gcatgtgttagtattgaagattataaacttgtatttcagtgtgtttataacactgtgaataaattactgaggttattttggggtttgactgttacaacat 10448386  T
Q  712 gagaagaatatcttatcttgaagagttttcagtgttgatcagttcatctttgttgatgatgtc 774  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10448387 gagaagaatatcttatcttgaagagttttcagtgttgatcagttcatctttgttgattatgtc 10448449  T

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