View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4407_low_11 (Length: 300)

Name: NF4407_low_11
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4407_low_11
NF4407_low_11
[»] chr7 (11 HSPs)
chr7 (155-257)||(1575845-1575952)
chr7 (155-257)||(27392593-27392690)
chr7 (155-257)||(28694690-28694787)
chr7 (155-248)||(323616-323709)
chr7 (155-237)||(36482647-36482729)
chr7 (159-247)||(6714223-6714311)
chr7 (159-237)||(36582535-36582613)
chr7 (155-210)||(10286416-10286471)
chr7 (159-243)||(31280188-31280272)
chr7 (155-201)||(8937846-8937892)
chr7 (155-191)||(29988049-29988085)
[»] chr5 (11 HSPs)
chr5 (155-257)||(40987342-40987449)
chr5 (155-242)||(13554770-13554857)
chr5 (155-248)||(33160520-33160613)
chr5 (155-243)||(13521493-13521581)
chr5 (159-248)||(1495899-1495988)
chr5 (159-211)||(27110661-27110713)
chr5 (159-237)||(41061209-41061287)
chr5 (155-243)||(42716134-42716222)
chr5 (163-243)||(35449663-35449742)
chr5 (155-212)||(12291415-12291472)
chr5 (155-240)||(4986183-4986268)
[»] chr4 (18 HSPs)
chr4 (155-257)||(24575154-24575261)
chr4 (155-247)||(9279927-9280019)
chr4 (155-248)||(47498851-47498944)
chr4 (169-247)||(7700297-7700375)
chr4 (159-248)||(42414560-42414649)
chr4 (155-243)||(46251939-46252027)
chr4 (155-230)||(18780958-18781033)
chr4 (159-245)||(3756969-3757055)
chr4 (159-253)||(42429995-42430089)
chr4 (155-217)||(47997031-47997093)
chr4 (169-237)||(6184084-6184152)
chr4 (159-207)||(34276954-34277002)
chr4 (155-246)||(20580594-20580685)
chr4 (155-253)||(24319044-24319142)
chr4 (163-213)||(31568178-31568228)
chr4 (155-213)||(37602649-37602707)
chr4 (155-243)||(24859010-24859098)
chr4 (169-257)||(40436458-40436541)
[»] chr8 (17 HSPs)
chr8 (155-257)||(6345307-6345404)
chr8 (155-257)||(31127258-31127355)
chr8 (155-257)||(37948942-37949039)
chr8 (155-257)||(43620036-43620143)
chr8 (169-257)||(1265121-1265214)
chr8 (155-247)||(26721170-26721262)
chr8 (155-248)||(32906905-32906998)
chr8 (155-247)||(13470866-13470958)
chr8 (155-238)||(26721289-26721372)
chr8 (155-248)||(4602598-4602691)
chr8 (159-248)||(4267351-4267440)
chr8 (155-217)||(42200110-42200172)
chr8 (155-243)||(3106185-3106273)
chr8 (159-253)||(3773828-3773920)
chr8 (155-247)||(10183246-10183337)
chr8 (158-213)||(27809007-27809062)
chr8 (161-257)||(34191073-34191169)
[»] chr6 (8 HSPs)
chr6 (155-257)||(7608279-7608386)
chr6 (155-211)||(16705398-16705454)
chr6 (155-248)||(21946712-21946805)
chr6 (155-257)||(3901136-3901238)
chr6 (155-256)||(10484386-10484485)
chr6 (158-217)||(10386157-10386216)
chr6 (178-253)||(13531320-13531395)
chr6 (158-231)||(33747876-33747949)
[»] chr1 (13 HSPs)
chr1 (155-237)||(14461718-14461800)
chr1 (155-257)||(5559395-5559492)
chr1 (159-253)||(41198513-41198607)
chr1 (18-75)||(44667495-44667552)
chr1 (165-248)||(24063925-24064008)
chr1 (155-253)||(16902574-16902672)
chr1 (155-217)||(41074905-41074967)
chr1 (159-248)||(24614749-24614838)
chr1 (155-236)||(33719615-33719696)
chr1 (163-253)||(35672103-35672193)
chr1 (155-248)||(7004677-7004770)
chr1 (155-248)||(22172875-22172968)
chr1 (168-257)||(31092063-31092152)
[»] chr2 (8 HSPs)
chr2 (155-257)||(16672014-16672122)
chr2 (159-231)||(21352338-21352410)
chr2 (159-253)||(22596081-22596175)
chr2 (155-210)||(18511559-18511614)
chr2 (159-248)||(42295822-42295910)
chr2 (159-231)||(7753802-7753871)
chr2 (155-193)||(10997254-10997292)
chr2 (164-241)||(34439851-34439928)
[»] chr3 (10 HSPs)
chr3 (169-257)||(37282644-37282737)
chr3 (155-248)||(32055882-32055975)
chr3 (169-247)||(19636560-19636638)
chr3 (155-248)||(25706303-25706397)
chr3 (159-246)||(1030467-1030554)
chr3 (169-238)||(39717243-39717312)
chr3 (159-246)||(19997380-19997468)
chr3 (155-248)||(29283002-29283090)
chr3 (164-243)||(48085313-48085392)
chr3 (163-217)||(40166829-40166883)
[»] scaffold0034 (1 HSPs)
scaffold0034 (155-217)||(47798-47860)
[»] scaffold0717 (1 HSPs)
scaffold0717 (155-246)||(5492-5583)
[»] scaffold0396 (1 HSPs)
scaffold0396 (169-247)||(1278-1356)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 1575845 - 1575952
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aactgaaccaaaccgaaccgc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||| |||||||||||||||||    
T  1575845 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgc 1575944  T
Q  250 aaaagtaa 257  Q
    ||||||||    
T  1575945 aaaagtaa 1575952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 27392593 - 27392690
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  27392593 tatttttggatgtgtttggatgttgttttgaaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aaccaaaccgaaccgcaaaag 27392687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 28694690 - 28694787
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||     |||||||||||||||||| ||    
T  28694690 tatttttttatgtgtttggatgttgttatggaaaaaccgctatgatcggattggatttcggattgcgttttcaa-----aaccaaaccgaaccgcaatag 28694784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 323709 - 323616
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||  | |||||||||| ||||||||| ||||||    
T  323709 tatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcaccttttcaaaaccgaaccaaacagaaccg 323616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 36482729 - 36482647
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaacc 237  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||  |||||||||| |||||    
T  36482729 tatttttggatgtgtttggatgttgttttagaaaaaccactatgatcggatcggttttcggattgtcttttcaaaaccgaacc 36482647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 6714311 - 6714223
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||  | || ||||||||||||| |||| ||||    
T  6714311 tttggatgtgtttggatgttattttgtaaaaaccgctaggatcggatcggatttcgaatcactttctcaaaactgaaccgaaccaaacc 6714223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 36582613 - 36582535
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaacc 237  Q
    |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||  | |||||||||| |||||    
T  36582613 tttggatgcgtttggatgttgttttgtaaaaaccgctaagatctgatcggatttcggatcactttttcaaaaccgaacc 36582535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 10286416 - 10286471
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggat 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || || ||||||    
T  10286416 tatttttggatgtgtttggatgttgttttggcaaaaccgctataattggttcggat 10286471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 31280272 - 31280188
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    |||||||  ||||||||||||||||| ||||| || || ||||||||||||||| ||||  | |||||||||| ||||| |||||    
T  31280272 tttggatacgtttggatgttgttttgtaaaaatcgttaagatcggatcggattttggatcactttttcaaaaccgaaccgaaccg 31280188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 8937892 - 8937846
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatc 201  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  8937892 tatttttggatgcgtttggatgttgttttgtaaaaaccgctaggatc 8937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 29988085 - 29988049
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaac 191  Q
    |||||||||||||||||||||||||||||| ||||||    
T  29988085 tatttttggatgtgtttggatgttgttttgtaaaaac 29988049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 40987342 - 40987449
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aactgaaccaaaccgaaccgc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||| |||||||||||||||||    
T  40987342 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgc 40987441  T
Q  250 aaaagtaa 257  Q
    ||||||||    
T  40987442 aaaagtaa 40987449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 13554770 - 13554857
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaacc 242  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||||| |||||||||| ||||||||||    
T  13554770 tatttttagatgtgtttggatgttgttttggaaaaaccgctataattagatcggatttcgaattgcattttcaaaaccgaaccaaacc 13554857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 33160520 - 33160613
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||| | |||||||||||||  | |||||||||  ||||||||||||||||    
T  33160520 tatttttggatgtgtttggaggttgttttggaaaaactgttatgatcagttcggatttcggatcaccttttcaaaatcgaaccaaaccgaaccg 33160613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 13521493 - 13521581
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||   |||||||||||  ||||| |||||||||| ||||| |||||    
T  13521493 tatttttggatgtgtttagatgttgttttggaataaccgctatgactagatcggatttcaaattgcattttcaaaaccgaaccgaaccg 13521581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 1495988 - 1495899
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||  | |||||||||| |||  |||| ||||||    
T  1495988 tttggatgtgtttggatattgttttgtaaaaaccgctaagatcggatcgggtttcggatcaccttttcaaaaccgaattaaacagaaccg 1495899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 27110661 - 27110713
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatt 211  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  27110661 tttggatgtgtttggatgttgttttgtaaaaaccgctaagatcggatcggatt 27110713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 41061209 - 41061287
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaacc 237  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||||| ||||||| ||||| | |||||||||| |||||    
T  41061209 tttggatgcgtttggatattgttttgtaaaaaccgctaagatcggaacggattttggattactttttcaaaaccgaacc 41061287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 42716222 - 42716134
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    |||||||| ||| ||||||||||||||||| |||||  |||| |||||  |  ||||||||||| | ||||||||||||||||||||||    
T  42716222 tatttttgaatgcgtttggatgttgttttgtaaaaaaagctaggatcgatttagatttcggattactttttcaaaactgaaccaaaccg 42716134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 35449742 - 35449663
Alignment:
Q  163 gatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    |||| ||||||||||||||||| ||||||||||| |||||| |||| ||| ||||  | ||||||||| ||||||||||||    
T  35449742 gatgcgtttggatgttgttttgtaaaaaccgctaagatcggttcggcttttggatcac-ttttcaaaattgaaccaaaccg 35449663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 12291472 - 12291415
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggattt 212  Q
    ||||||||||||  |||||||||||||||| ||||||| ||| ||| |||||||||||    
T  12291472 tatttttggatgcatttggatgttgttttgtaaaaacctctaagattggatcggattt 12291415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 4986183 - 4986268
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaa 240  Q
    ||||||| |||| ||||||||||||||||| | ||||| ||| ||||  ||| ||||| ||||  | |||||||||| ||||||||    
T  4986183 tattttttgatgcgtttggatgttgttttgtataaaccactaggatcaaatcagatttaggatcactttttcaaaaccgaaccaaa 4986268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 24575261 - 24575154
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aactgaaccaaaccgaaccgc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||| |||||||||||||||||    
T  24575261 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgc 24575162  T
Q  250 aaaagtaa 257  Q
    ||||||||    
T  24575161 aaaagtaa 24575154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 9279927 - 9280019
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  9279927 tatttttggatttgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaacctaacc 9280019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 47498944 - 47498851
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  | |||| ||||| ||||| ||||||||||    
T  47498944 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgattggttcggatttcggatcacctttttaaaaccgaaccgaaccgaaccg 47498851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 7700297 - 7700375
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||    
T  7700297 tttggatgttgttttagaaaaaccgctatgatcggatcgaatttcagattgcgttttcaaaactgaaccgaaccaaacc 7700375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 42414649 - 42414560
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||  | |||||||||| ||||||||||||||||    
T  42414649 tttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcaaaaccgaaccaaaccgaaccg 42414560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 46252027 - 46251939
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||  | |||||||||| ||||| |||||    
T  46252027 tatttttggatgtgtttggatgttgttttggaaaagccgctatgattggttcggatttcggatcaccttttcaaaaccgaaccgaaccg 46251939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 18781033 - 18780958
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaa 230  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||| |||| ||||||| ||| |||||||||||    
T  18781033 tatttttggatgtgtttgaattttgttttggaaaaaccgttatgatcagatcagatttcgaattacgttttcaaaa 18780958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 3756969 - 3757055
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaa 245  Q
    |||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||||||  | |||||||||| |||||||||||||    
T  3756969 tttggatgcgtttgaatgttgttttttaaaaaccgttaagatcggatcggatttcggatcactttttcaaaaccgaaccaaaccgaa 3757055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 42429995 - 42430089
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    |||||||  ||||||||||||||||| ||||||||||  |||||||||| |||||||||  | ||||||||||  |||||||||||| |||||||    
T  42429995 tttggatccgtttggatgttgttttgtaaaaaccgctcagatcggatcgaatttcggatcactttttcaaaaccaaaccaaaccgaaacgcaaaa 42430089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 47997093 - 47997031
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 217  Q
    ||||||| |||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  47997093 tatttttcgatgtgcttgaatgttgttttgtaaaaaccgctaggatcggatcggatttcggat 47997031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 6184152 - 6184084
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaacc 237  Q
    |||||||||||||||| ||||| || || ||||||||||||||||||||  | ||||||||||| ||||    
T  6184152 tttggatgttgttttgtaaaaatcgttaggatcggatcggatttcggatcactttttcaaaactaaacc 6184084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 34276954 - 34277002
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcg 207  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  34276954 tttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcg 34277002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 20580594 - 20580685
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaac 246  Q
    |||||||||||| | ||| ||||||||||| || ||  |||| |||||||||||||||| |||  | ||||||||||  |||||||||||||    
T  20580594 tatttttggatgcgcttgaatgttgttttgtaagaattgctaggatcggatcggatttcagatcactttttcaaaaccaaaccaaaccgaac 20580685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 24319044 - 24319142
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    |||||||||||| ||||||||||||||||   ||||||| || |||||| | | |||| ||||  | || ||||||| ||||||||||||||| |||||    
T  24319044 tatttttggatgcgtttggatgttgttttatcaaaaccgttaggatcggtttgaattttggatcactttctcaaaaccgaaccaaaccgaaccacaaaa 24319142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 31568228 - 31568178
Alignment:
Q  163 gatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttc 213  Q
    |||||| ||||||||||||||| ||||||||||| || |||||||||||||    
T  31568228 gatgtggttggatgttgttttgtaaaaaccgctaagaccggatcggatttc 31568178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 37602707 - 37602649
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttc 213  Q
    |||||||||||||||||| ||||| ||||| |||||| |||| ||||||||| ||||||    
T  37602707 tatttttggatgtgtttgaatgttcttttgtaaaaactgctaggatcggatctgatttc 37602649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 24859010 - 24859098
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    |||| |||||||||||||||||   |||||  ||||||| |  ||| ||||||||||| ||||||  |||||||||| ||||| |||||    
T  24859010 tattattggatgtgtttggatgacattttgtgaaaaccgtttggattggatcggattttggattgatttttcaaaaccgaaccgaaccg 24859098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 40436458 - 40436541
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaagtaa 257  Q
    |||||||||||||||| |||||  | || |||| ||||||| |||||||  | |||||||     ||||||||||||||||||||||||    
T  40436458 tttggatgttgttttgtaaaaattgttacgatcagatcggacttcggatcactttttcaa-----aaccaaaccgaaccgcaaaagtaa 40436541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 6345307 - 6345404
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  6345307 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aaccaaaccgaaccgcaaaag 6345401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 31127355 - 31127258
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  31127355 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aaccaaaccgaaccgcaaaag 31127261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 37949039 - 37948942
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  37949039 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aaccaaaccgaaccgcaaaag 37948945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 43620143 - 43620036
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aactgaaccaaaccgaaccgc 249  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     ||| |||||||||||||||||    
T  43620143 tatttttggatgtgtttggatgttgctttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgc 43620044  T
Q  250 aaaagtaa 257  Q
    ||||||||    
T  43620043 aaaagtaa 43620036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 1265121 - 1265214
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaact-----gaaccaaaccgaaccgcaaaagtaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  1265121 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaaccaaaccgaaccgcaaaagtaa 1265214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 26721262 - 26721170
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||| |||| ||||    
T  26721262 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcttattttggattgcgttttcaaaaccgaaccgaaccaaacc 26721170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 32906905 - 32906998
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||  | |||||||||| ||||||||||||||||    
T  32906905 tatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaaccgaaccg 32906998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 13470866 - 13470958
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||| |||||||||| |||||||||| ||||    
T  13470866 tatttttggatgtgtttggatgttgttttggaaaaaacgctacgatcggatcggttttcggtttgccttttcaaaaccgaaccaaaccaaacc 13470958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 26721372 - 26721289
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaacca 238  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||| ||||||    
T  26721372 tatttttggatgtgtttggacgttgttttggaaaaaccgctatgatcaaatcagatttcggattgcgttttcaaaaccgaacca 26721289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 4602598 - 4602691
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||  | |||||||||| ||||||||||||||||    
T  4602598 tatttttggacgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaaccgaaccg 4602691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 4267351 - 4267440
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| ||||  | |||||||||| ||||||||||||||||    
T  4267351 tttggatgcgtttggatgttattttgtaaaaaccgctaagatcggatcggattttggatcaccttttcaaaaccgaaccaaaccgaaccg 4267440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 42200172 - 42200110
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 217  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||||||| |||||||||    
T  42200172 tatttttagatgtgtttggatgttgttttataaaaaccgttatgatcggatcgaatttcggat 42200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 3106185 - 3106273
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    |||||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||||| ||||  | || ||||||| ||||| |||||    
T  3106185 tatttttggatgcgtttggatgttgttttgtaaaaactgctaggatcgtatcggattttggatcactttctcaaaaccgaaccgaaccg 3106273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 3773828 - 3773920
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    |||||||| ||||||||||||||| | ||||||| ||| ||| ||||||||||| ||||  | ||||||||||  ||||||||||||||||||||    
T  3773828 tttggatgcgtttggatgttgttt-gtaaaaaccactaagat-ggatcggattttggatcactttttcaaaaccaaaccaaaccgaaccgcaaaa 3773920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 10183337 - 10183246
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    ||||||||||||||||||||||||||||   |||||| | || ||| ||||||||||||| || |  ||||||||| |||| |||||| ||||    
T  10183337 tatttttggatgtgtttggatgttgtttcctaaaaactgttaagattggatcggatttcgaatcgatttttcaaaa-tgaatcaaaccaaacc 10183246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 27809062 - 27809007
Alignment:
Q  158 ttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttc 213  Q
    ||||||||||||||| |||||| || | |||||||| || ||||||||||||||||    
T  27809062 ttttggatgtgtttgaatgttggttagtaaaaaccgttaagatcggatcggatttc 27809007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 257
Target Start/End: Original strand, 34191073 - 34191169
Alignment:
Q  161 tggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaagtaa 257  Q
    ||||||||| ||||||||||||||  ||| |||||| ||||  ||| |||||||| |  | || |||||||  || ||||||||||| |||||||||    
T  34191073 tggatgtgtctggatgttgttttgtcaaatccgctaggatcatatcagatttcgggtcactttctcaaaaccaaaacaaaccgaaccacaaaagtaa 34191169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 7608386 - 7608279
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aactgaaccaaaccgaaccgc 249  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||| |||||||||||||||||    
T  7608386 tatttttggatttgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgc 7608287  T
Q  250 aaaagtaa 257  Q
    ||||||||    
T  7608286 aaaagtaa 7608279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 16705454 - 16705398
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16705454 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatt 16705398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 21946712 - 21946805
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||    |||||||||| |||||||||| |||||    
T  21946712 tattttttgatgtgtttggatgttgttttggaaaaaccgctataattggttcggatttcggatcagcttttcaaaaccgaaccaaaccaaaccg 21946805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 3901238 - 3901136
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    ||||||||||||||||||||||||||||||  |||||||| | |||| ||| ||| |||||||  | |||| ||||| ||||| ||||||||||||||||    
T  3901238 tatttttggatgtgtttggatgttgttttgccaaaaccgccaagatcagattggacttcggatcacttttttaaaaccgaaccgaaccgaaccgcaaaag 3901139  T
Q  255 taa 257  Q
    |||    
T  3901138 taa 3901136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 10484485 - 10484386
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    |||||||  ||| ||||||||||||| ||  |||||||||||||||||||| |||||||||||||| || |||||||||  || ||| ||||||||||||    
T  10484485 tattttttaatgcgtttggatgttgtcttctaaaaaccgctatgatcggattggatttcggattgctttctcaaaactg--ccgaactgaaccgcaaaag 10484388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 10386157 - 10386216
Alignment:
Q  158 ttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 217  Q
    |||||||||  || ||||||||||||| ||||||||||| ||||  ||||||||||||||    
T  10386157 ttttggatgcattcggatgttgttttgtaaaaaccgctaggatcatatcggatttcggat 10386216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 13531320 - 13531395
Alignment:
Q  178 tgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    ||||||| ||||||| |||  ||| |||| ||||||| ||  | |||||||||| |||||||||||||||||||||    
T  13531320 tgttttgtaaaaaccactaatatcagatcagatttcgaatcactttttcaaaaccgaaccaaaccgaaccgcaaaa 13531395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 33747876 - 33747949
Alignment:
Q  158 ttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaac 231  Q
    |||||||||||||| || ||||||||| | ||| ||||| ||| |||||  ||||||||| || ||||||||||    
T  33747876 ttttggatgtgtttagaagttgttttgtagaaagcgctaagattggatcatatttcggatagctttttcaaaac 33747949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 14461718 - 14461800
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaacc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14461718 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaacc 14461800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 5559395 - 5559492
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaag 254  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||     |||||||||||||||||||||    
T  5559395 tatttttggatgtgtttggatgttgttttggaaaaaccgccatgatcggatcagatttcggattgcattttcaa-----aaccaaaccgaaccgcaaaag 5559489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 41198607 - 41198513
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||    
T  41198607 tttggatgtgattggatgttgttttgtaaaaaccgctaagatcggatcggatttcggatcacttttccaaaactgaaccaaaccgaaccgcaaaa 41198513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 44667552 - 44667495
Alignment:
Q  18 gttttattacttttccctttattacgtttctctctccaaaaattgaggtatttggatc 75  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44667552 gttttattacttctccctttattacgtttctctctccaaaaattgaggtatttggatc 44667495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 24064008 - 24063925
Alignment:
Q  165 tgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||  | ||||||||||  || ||||||||||||    
T  24064008 tgtgtatggatgttgttttggaaaaaccgctatgattggatcggatttcggatcactttttcaaaaccaaatcaaaccgaaccg 24063925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 16902574 - 16902672
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    ||||||| |||||||||||||||||||||| |||||| || | |||| |||   |||| ||||  | |||||||||| |||||||||||||||||||||    
T  16902574 tatttttagatgtgtttggatgttgttttgcaaaaactgcaaggatcagattaaattttggatcactttttcaaaaccgaaccaaaccgaaccgcaaaa 16902672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 41074905 - 41074967
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || ||| | |||||||||    
T  41074905 tatttttggatgtgtttggatgttgttttgaaaaaaccgctatggtcagattgaatttcggat 41074967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 24614749 - 24614838
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||||||  ||||||||| |||||| ||||||||||| ||||||||| ||||| ||||  | |||| ||||| ||||||||||||||||    
T  24614749 tttggatgcttttggatgtcgttttgtaaaaaccgctaagatcggatcagattttggatcacttttttaaaaccgaaccaaaccgaaccg 24614838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 33719696 - 33719615
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaac 236  Q
    |||||||||||| ||||||||||||||||| |||||| |||| ||||| |||  ||||| |||  | |||||||||||||||    
T  33719696 tatttttggatgcgtttggatgttgttttgtaaaaactgctaggatcgaatcaaatttcagatcactttttcaaaactgaac 33719615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 35672193 - 35672103
Alignment:
Q  163 gatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    |||||||||||||||| ||||  ||||||||||| |||| ||||| |||| | ||  | ||||| | || |||||||||||||||||||||    
T  35672193 gatgtgtttggatgttattttttaaaaaccgctaagatcagatcgaattttgaatcactttttcgataccgaaccaaaccgaaccgcaaaa 35672103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 7004677 - 7004770
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||| ||||||||||||| |||   |||||  |||||||||  ||| ||||||||||| ||||||  |||||||||| ||||||||| ||||||    
T  7004677 tattattggatgtgtttgaatgacattttgtgaaaaccgcttggattggatcggattttggattgatttttcaaaaccgaaccaaactgaaccg 7004770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 22172875 - 22172968
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||| |||||||||||||||||    |||| ||||||||||  ||| | ||| ||||| ||||||  |||||||||||||||||||||| ||||    
T  22172875 tattattggatgtgtttggatgacactttgtaaaaaccgcttggattgaatcagattttggattgatttttcaaaactgaaccaaaccggaccg 22172968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 31092152 - 31092063
Alignment:
Q  168 gtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaagtaa 257  Q
    ||||||||||||||||| ||||||  ||| |||| |||| |||||| ||   | || |||||| |||| ||||||||||| |||||||||    
T  31092152 gtttggatgttgttttgtaaaaacaactaagatcagatcagatttcagaccactttctcaaaattgaatcaaaccgaaccacaaaagtaa 31092063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 16672014 - 16672122
Alignment:
Q  155 tatttttggatgtgt-ttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aactgaaccaaaccgaaccg 248  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||| ||||||||||||||||    
T  16672014 tatttttggatgtgtgttggatgttgttttggaaaaactgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccg 16672113  T
Q  249 caaaagtaa 257  Q
    |||||||||    
T  16672114 caaaagtaa 16672122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 21352410 - 21352338
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaac 231  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||  | ||||||||||    
T  21352410 tttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcaaaac 21352338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 22596081 - 22596175
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccgcaaaa 253  Q
    ||||||||  ||| |||||||||||| ||||| ||||| |||| |||||||||||||||  | ||||||||||  ||||||| ||||||||||||    
T  22596081 tttggatgcatttcgatgttgttttgtaaaaatcgctaagatcagatcggatttcggatcactttttcaaaaccaaaccaaaacgaaccgcaaaa 22596175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 18511559 - 18511614
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggat 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || || ||||||    
T  18511559 tatttttggatgtgtttggatgttgttttggcaaaaccgctataattggttcggat 18511614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 42295910 - 42295822
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||||||| ||||| ||||||||||| |||||| |||| |||||| |||| ||||||||  | |||||||||  ||||||||||||||||    
T  42295910 tttggatgcgtttgtatgttgttttgtaaaaactgctaagatcggttcggctttcggatcac-ttttcaaaatcgaaccaaaccgaaccg 42295822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 7753802 - 7753871
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaac 231  Q
    ||||||||||||| |||||||||||| |||||   |||||||||||||||||||| |||  | ||||||||||    
T  7753802 tttggatgtgttttgatgttgttttgtaaaaa---ctatgatcggatcggatttcagataactttttcaaaac 7753871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 10997254 - 10997292
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccg 193  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10997254 tatttttggatgtgtttggatgttgttttgtaaaaaccg 10997292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 34439851 - 34439928
Alignment:
Q  164 atgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaac 241  Q
    ||||||||| |||||  |||| |||||||||||  || |||||||||| |||||| | |||||||||| |||||||||    
T  34439851 atgtgtttgaatgttagtttgtaaaaaccgctagaattggatcggattccggattactttttcaaaaccgaaccaaac 34439928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 37282737 - 37282644
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaa-----aactgaaccaaaccgaaccgcaaaagtaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||| |||||||||||||||||||||||||    
T  37282737 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 37282644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 32055975 - 32055882
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||  | |||||||||| |||||||| |||||||    
T  32055975 tatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaatcgaaccg 32055882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 19636638 - 19636560
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||| |||| ||||    
T  19636638 tttggatgttgttttggaaaagccgcgatgatcggatcggatttcggattgagttttcaaaaccgaaccgaaccaaacc 19636560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 25706303 - 25706397
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaa-accgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| |||  | |||||||||| ||||||||||||||||    
T  25706303 tatttttggatgtgtttggatgttgttttgaaaaaaaccgctatgatcggttcggacttcagataaccttttcaaaaccgaaccaaaccgaaccg 25706397  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 1030467 - 1030554
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaac 246  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||  | ||||| |||| ||||||||||||||    
T  1030467 tttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcgaaaccgaaccaaaccgaac 1030554  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 39717312 - 39717243
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaacca 238  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||  | |||| ||||| ||||||    
T  39717312 tttggatgttgtattggaaaaaccgctatgatcggttcggattttggatcaccttttgaaaaccgaacca 39717243  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 19997380 - 19997468
Alignment:
Q  159 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcgga-tttcggattgcgttttcaaaactgaaccaaaccgaac 246  Q
    |||||||| |||| |||||||| | | |||||| |||| |||||||||||| ||||||||  | |||||||||| ||||||||||||||    
T  19997380 tttggatgcgtttagatgttgtctcgtaaaaactgctaagatcggatcggattttcggatcactttttcaaaaccgaaccaaaccgaac 19997468  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 29283002 - 29283090
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaaccg 248  Q
    ||||||||||||  |||||||||||||||| |||||||||||     ||| ||||||||||||  | || |||||| |||||| ||||||||||    
T  29283002 tatttttggatgcatttggatgttgttttgtaaaaaccgcta-----ggaacggatttcggatcactttctcaaaattgaaccgaaccgaaccg 29283090  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 48085392 - 48085313
Alignment:
Q  164 atgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccg 243  Q
    ||||||||||||||||||||| ||||| || |   |||  ||||||||||||||  | |||||||||| |||||||||||    
T  48085392 atgtgtttggatgttgttttgtaaaaagcgatggtatcaaatcggatttcggatcactttttcaaaaccgaaccaaaccg 48085313  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 40166883 - 40166829
Alignment:
Q  163 gatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 217  Q
    |||||||||| ||||||||||| ||||||||||| |||  |||||||| ||||||    
T  40166883 gatgtgtttgaatgttgttttgtaaaaaccgctaagattcgatcggatatcggat 40166829  T

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Target: scaffold0034 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 47860 - 47798
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 217  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  47860 tatttgtggatgtgtttggatgttgttttgtaaaaatcgctatgatcagatcggatttcggat 47798  T

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Target: scaffold0717 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 5492 - 5583
Alignment:
Q  155 tatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaac 246  Q
    |||||||||||| | ||||||||||||||| || || ||||| |||||||||||||||  |||  | ||||||||||  ||||| |||||||    
T  5492 tatttttggatgcgcttggatgttgttttgtaagaatcgctaggatcggatcggatttaagatcactttttcaaaaccaaaccacaccgaac 5583  T

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Target: scaffold0396 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 1356 - 1278
Alignment:
Q  169 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaactgaaccaaaccgaacc 247  Q
    ||||||| |||||||| ||| ||||||| ||||| ||||||||||||||  | |||||||||  |||  ||||||||||    
T  1356 tttggatattgttttgtaaacaccgctaagatcgaatcggatttcggatcactttttcaaaatcgaattaaaccgaacc 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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