View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4407_low_13 (Length: 278)
Name: NF4407_low_13
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 44684933 - 44684661
Alignment:
| Q |
1 |
cttcttcattaaatttttcattctattcactagatccgtatggtatattgttttccttggatgtttaaattctttgatacctatctaaaacaattcacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44684933 |
cttcttcattaaatttttcattctattcactagatccgtatggtatattgttttccttggatgtttaaattctttgatacctatctaaaacaattcacct |
44684834 |
T |
|
| Q |
101 |
acnnnnnnnnn--------atgagcataaactattgttcacttactaacgtcnnnnnnntgatattgaaggctaccccactaatcaagacttcaactacg |
192 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44684833 |
actttttttttttttttttatgagcataaactattcttcacttactaacgtcaaaaaaatgatattgaaggctaccccactaatcaagacttcaactacg |
44684734 |
T |
|
| Q |
193 |
acaaattagcaccattatttcattttcacttgaacaatgcgggtgatccatttgttggaagtagtttctctct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44684733 |
acaaattagcaccattatttcattttcacttgaacaatgcgggtgatccatttgttggaagtagtttctctct |
44684661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 44661671 - 44661558
Alignment:
| Q |
152 |
tgatattgaaggctaccccactaatcaagacttcaactacgacaaattagcaccattatttcattttcacttgaacaatgcgggtgatccatttgttgga |
251 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| || |||||||||||| |||| ||||||||||| ||||| || ||||||||| ||||| |
|
|
| T |
44661671 |
tgatattgaaggctatcccacaaatcaagacttcaactatgaagcattagcaccattgcttcaatttcacttgaataatgctggagatccatttcttgga |
44661572 |
T |
|
| Q |
252 |
agtagtttctctct |
265 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
44661571 |
agcagcttctctct |
44661558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 29340022 - 29340120
Alignment:
| Q |
168 |
cccactaatcaagacttcaactacgacaaattagcaccattatttcattttcacttgaacaatgcgggtgatccatttgttggaagtagtttctctctc |
266 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||| || |||| ||||||||||||||||| || ||||||||| ||||||| || ||||||||| |
|
|
| T |
29340022 |
cccacaaatcaagatttcaactatgaagcattagcaccgttgcttcaatttcacttgaacaatgctggagatccatttcttggaagcagcttctctctc |
29340120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 29352978 - 29353057
Alignment:
| Q |
174 |
aatcaagacttcaactacgacaaattagcaccattatttcattttcacttgaacaatgcgggtgatccatttgttggaag |
253 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||| |||| |||| |||||||||||| || ||||||||| ||||||| |
|
|
| T |
29352978 |
aatcaagacttcaactatgaagcattagcaccgttacttcaatttctcttgaacaatgctggagatccatttcttggaag |
29353057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1024 times since January 2019
Visitors: 8371