View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_low_14 (Length: 276)
Name: NF4407_low_14
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 39211247 - 39211521
Alignment:
| Q |
1 |
ttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39211247 |
ttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaa |
39211346 |
T |
|
| Q |
101 |
catgcgttaattgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctg |
200 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39211347 |
catgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatttatgctatcagctatatagtttttccactgcaacatctg |
39211446 |
T |
|
| Q |
201 |
ttgtcaagattcaattagacatagtgaaattgacttaagtacattatactttcttatgactatgctttatagtat |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39211447 |
ttgtcaagattcaattagacatagtgaaattgacttaagtacattatactttcttatgactatgctttattgtat |
39211521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 27509693 - 27509419
Alignment:
| Q |
1 |
ttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27509693 |
ttatgaactttttcaattctttgcatataagaaaaatagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaa |
27509594 |
T |
|
| Q |
101 |
catgcgttaattgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctg |
200 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
27509593 |
catgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatttatactatcagttatatagtttttcccctgcaacatctg |
27509494 |
T |
|
| Q |
201 |
ttgtcaagattcaattagacatagtgaaattgacttaagtacattatactttcttatgactatgctttatagtat |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
27509493 |
ttgtcaagattcaattagacatagtgaaattgactctagtacattatactttcttatgactatgctttattgtat |
27509419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 27271714 - 27271992
Alignment:
| Q |
1 |
ttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaattaag |
98 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||| || ||| ||||||| ||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
27271714 |
ttatgaactttttaaattctttgcatacaagaaactcagcgcctcaattatgtatttcttaagctatcaattttcagttcttgcatctgttacaattaag |
27271813 |
T |
|
| Q |
99 |
aacatgc-gttaat--tgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaac |
195 |
Q |
| |
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| ||| | || | | ||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
27271814 |
atgatgatgacaaacattcactgcagctgttacatccaatttaggtagaaaaaa-tgaaacatatttatactatcagctatatagtttttccactgcaac |
27271912 |
T |
|
| Q |
196 |
atctgttgtcaagattcaattagacatagtgaaattgacttaagtacattatactttcttatgactatgctttatagtat |
275 |
Q |
| |
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||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
27271913 |
atctgttgtgaagattcaattagacacagtgaaatagacttaaatacattatactttcttatgactatgctttattgtat |
27271992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 42093232 - 42092959
Alignment:
| Q |
1 |
ttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaattaag |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||||| | || ||||| ||||||||||| | |
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| T |
42093232 |
ttatgaactttctcaattctttgcatataagaaaaatagtgcttcaattatgtacttcaaatgctatcaattttgagttcatgcatatgttacaattagg |
42093133 |
T |
|
| Q |
99 |
aacatgcgtt--aattgccctgcagctgttacatccaatttaagtagnnnnnnn-tgaaacaaatttatgatatcagctatatagtttttccactgcaac |
195 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||| | |
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| T |
42093132 |
cacatgagtatcaattgccctgtggctgttacatccaatttcagtaggaaaaaaatgaaacaaatttataccatcagctttatagtttttccactgcagc |
42093033 |
T |
|
| Q |
196 |
atctgttgtcaagattcaattagacatagtgaaattgacttaagtacattatactttcttatgactatgcttta |
269 |
Q |
| |
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| ||||||||||||||||||| |||||||||||| ||||||| || ||||||| ||||||||||||| ||||| |
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| T |
42093032 |
acatgttgtcaagattcaattaaacatagtgaaatagacttaaatatattataccttcttatgactatacttta |
42092959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 29707143 - 29706865
Alignment:
| Q |
1 |
ttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaattaag |
98 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| || || ||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
29707143 |
ttatgaactttttaaattctttgcatacaagaaacttagcgcctcaattatgtacttcttaagctatcaattttcagttcttgcatctgttacaattaag |
29707044 |
T |
|
| Q |
99 |
aacatgcgttaat---tgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaac |
195 |
Q |
| |
|
|| ||| || | | |||||| ||||||||| |||||| |||| | ||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
29707043 |
aagatgatgaaaaacattcactgcagttgttacatctaatttaggtagaaaaaatt-aaacatatttatactatcagctatatagtttttccactgcaac |
29706945 |
T |
|
| Q |
196 |
atctgttgtcaagattcaattagacatagtgaaattgacttaagtacattatactttcttatgactatgctttatagtat |
275 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
29706944 |
atctgttgtgaagattcaattagacacagtgaaatagacttaaatacattatactttcttatgactatgctttattgtat |
29706865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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