View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4407_low_2 (Length: 496)
Name: NF4407_low_2
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 113 - 478
Target Start/End: Complemental strand, 39476043 - 39475666
Alignment:
| Q |
113 |
tcttatattggtctgatggtgtggcttgagaccttaga-gtatat----------gtttgagatttgattctcctcaatttaacaaaatgtacttttcta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476043 |
tcttatattggtctgatggtgtggcttgagaccttaaaagtatatttcttttaatgtttgagatttgattctcctcaatttaacaaaatgtacttttcta |
39475944 |
T |
|
| Q |
202 |
aaatagaaattcaattcaaatactctttggcgtttgttgagttaaggg-attgattatttggctcatgtaaattgattgattcaatccaaaccaaatcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475943 |
aaatagaaattcaattcaaatactctttggcgtttgttgagttaaggggattgattatttggctcatgtaaattgattgattcaatccaaaccaaatcca |
39475844 |
T |
|
| Q |
301 |
cattttcaacctaaccatattcataaccgcctaaaacatgacttgttaacttgccaactaagagaaaaagatgcttatcatgtagaacatggcatgtgta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475843 |
cattttcaacctaaccatattcataaccgcctaaaacatgacttgttaacttgccaactaagagaaaaagatgcttatcatgtagaacatggcatgtgta |
39475744 |
T |
|
| Q |
401 |
tagcactgaccaaatccacgtgtaggatgaagcaagtgtcaaccatgctactctacacgttttttggcatgctatatt |
478 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475743 |
tagcaatgaccaaatccacgtgtaggatgaagcaagtgtcaaccatgctactctacacgttttttggcatgctatatt |
39475666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 39476107 - 39476041
Alignment:
| Q |
13 |
aatattacatgttggattagttggagagcgattacgagtatatgaagaagcaaatagcagtttttct |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39476107 |
aatattacatgttggattagttggagagcgattacgagtatatgaagaagcaaatagcattttttct |
39476041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1986 times since January 2019
Visitors: 8647