View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_low_20 (Length: 222)
Name: NF4407_low_20
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 5284573 - 5284764
Alignment:
| Q |
19 |
ttgagtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggcctagtcctgtttgttttgtttcaactttctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5284573 |
ttgagtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggcctagtcctgtttgttttgtttcaactttctg |
5284672 |
T |
|
| Q |
119 |
agctagcaatggctcagaaatatcacctgcatatatataatccagtaaagagaaacaattaatcaatgttccaaggttgagtagtgttagaa |
210 |
Q |
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| T |
5284673 |
agctagcaatggctcagaaatatcacctgcatatatataatccattaaagagaaacaattaatcaatgttccaaggttgagtagtgttagaa |
5284764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 14951392 - 14951578
Alignment:
| Q |
23 |
gtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggcctagtcctgtttgttttgtttcaactttctgagct |
122 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
14951392 |
gtaacctaaactgagtagagagttaacccaagagaaaatcaacttgctgagaaaagtagcatgacttagttctgtttgttttgtttcaactttctgagct |
14951491 |
T |
|
| Q |
123 |
agcaatggctcagaaatatcacctgcatatatataatccagtaaagagaaacaattaatcaatgttccaaggttgagtagtgttaga |
209 |
Q |
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|||| |||||||||| | ||||||| |||||||||| | |||||||||| | |||||||||||||||||||||| || ||||||| |
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| T |
14951492 |
agcagtggctcagaagtttcacctgaatatatataactcgttaaagagaaatatttaatcaatgttccaaggttgaataatgttaga |
14951578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 5312242 - 5312142
Alignment:
| Q |
19 |
ttgagtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggcctagtcctgtttgttttgtttcaactttctg |
118 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
5312242 |
ttgagtaacctaaactgagtaaagaattaacccaagagaaaatcaacttgctgagaaaggtagcacggcctagtcctgtttgttttgtttcaactttctg |
5312143 |
T |
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| Q |
119 |
a |
119 |
Q |
| |
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| |
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| T |
5312142 |
a |
5312142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 5305030 - 5304912
Alignment:
| Q |
19 |
ttgagtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggcctagtcctgtttgttttgtttcaactttctg |
118 |
Q |
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|||||||||| || ||||||| ||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
5305030 |
ttgagtaaccaaaactgagtaaagaattaacccaagagaaaattaacttgctgagaaaggtagcacagcctagtcctgtttgttttgtttcaactttctg |
5304931 |
T |
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| Q |
119 |
agctagcaatggctcagaa |
137 |
Q |
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| ||| || |||||||||| |
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| T |
5304930 |
atctatcagtggctcagaa |
5304912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 5292068 - 5292159
Alignment:
| Q |
19 |
ttgagtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggcctagtcctgtttgttttgtttca |
110 |
Q |
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||||||||||||| ||||||| |||||||| |||||||||| |||||||||| |||||||||||| |||||| |||||||||||| |||||| |
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| T |
5292068 |
ttgagtaacctaaactgagtaaagaattaatccaagagaaattcaacttgctaagaaaagtagcacggcctaatcctgtttgtttagtttca |
5292159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 15124279 - 15124208
Alignment:
| Q |
19 |
ttgagtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggccta |
90 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
15124279 |
ttgagtaacctaaactgagtaatgaattaacccaagagaaaatcaacttgctaagaaaagtagcatgaccta |
15124208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 5292723 - 5292772
Alignment:
| Q |
147 |
gcatatatataatccagtaaagagaaacaattaatcaatgttccaaggtt |
196 |
Q |
| |
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|||||||||||||||| |||||| ||||| ||||||||||||| |||||| |
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| T |
5292723 |
gcatatatataatccattaaagataaacagttaatcaatgttctaaggtt |
5292772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 31528070 - 31528184
Alignment:
| Q |
19 |
ttgagtaacctaatctgagtagagaattaacccaagagaaaatcaacttgctgagaaaagtagcatggcctagtcctgtttgttttgtttcaactttctg |
118 |
Q |
| |
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||||||| ||||| || || | ||| |||||||||||||||| ||||||||||| || ||||||| || |||||| ||||||||||||||| |||||| |
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| T |
31528070 |
ttgagtatcctaaactaagcaaagagttaacccaagagaaaactaacttgctgagcaaggtagcattgcttagtcccgtttgttttgtttcacatttctg |
31528169 |
T |
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| Q |
119 |
agctagcaatggctc |
133 |
Q |
| |
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|||||| | |||||| |
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|
| T |
31528170 |
agctagtagtggctc |
31528184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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