View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_low_21 (Length: 218)
Name: NF4407_low_21
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 22860584 - 22860800
Alignment:
| Q |
1 |
tagaaagttgcaaaatcaagaaaatcataatgaaactcaataaaacagcaaaggaagcttttaaaccttgcttctgagaaataatcgatcaaaatttaaa |
100 |
Q |
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| T |
22860584 |
tagaaagttgcaaaatcaagaaaatcataatgaaactcaataaaacagcaaag-aagcttttaaaccttgcttctgagaaataatcgatcaaaatttaaa |
22860682 |
T |
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| Q |
101 |
ggttttccatttttgccttccatgcctgctggatccatgccatcatcaccataacaaaactgaacaagactacaattggcatctcttacagtgtaatcat |
200 |
Q |
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| T |
22860683 |
ggttttccatttttgccttccatgcctgctggatccatgccatcatcaccataacaaaactgaacaagactacaattggcatctcttacagtgtaatcat |
22860782 |
T |
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| Q |
201 |
aatgtaaaaataagtctt |
218 |
Q |
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|||||||||||||||||| |
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| T |
22860783 |
aatgtaaaaataagtctt |
22860800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 22824856 - 22825045
Alignment:
| Q |
30 |
atgaaactcaataaaacagcaaaggaagcttttaaaccttgcttctgagaaataatcgatcaaaatttaaaggttttccatttttg-ccttccatgcctg |
128 |
Q |
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|||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
22824856 |
atgaaactaaataaaacaacaaaggaatcttttaaaccttgcttctgagaaataaccgatcaaaatttaatggttttccatttttttccttccatgcctg |
22824955 |
T |
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| Q |
129 |
ctggatccatgccatcatcaccataacaaaactgaacaagactacaattggcatctcttacagtgtaatcataatgtaaaaataagtctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
22824956 |
ctggatccatgccatcatcaccataacaaaactgaacaatactaccattggtatctcttacggtgtaatcataatgtaaaaataagtctt |
22825045 |
T |
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