View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_low_3 (Length: 417)
Name: NF4407_low_3
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_3 |
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| [»] scaffold0157 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 36 - 417
Target Start/End: Complemental strand, 36079 - 35688
Alignment:
| Q |
36 |
gtgaatatccaattttttggtgaattgacattgcttat------------ataacacacggacggacacacacacatatatcatctattaatttttatct |
123 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36079 |
gtgaatatccaaatttttggtgaattgacattgcttatttatcatggaatataacacacggacggacacacaca--tatatcatctattaatttttatct |
35982 |
T |
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| Q |
124 |
cttatcctagtgtcaaggcaatcactaatgtttttgtcttattgnnnnnnnattgtgcttattttatcgtatatagttnnnnnnnnttgaaaataccaca |
223 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35981 |
attattctagtgtcaaggtgatcactaatgtttttgtcttattgtttttttattgtgcttattttatcgtatatagttaaaaaaaattgaaaataccaca |
35882 |
T |
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| Q |
224 |
attaaatcaacttttaacttatattgttcatattgtagtggaattgttactctttattctggtttggccaaggccaaccccttgataggttttggatatc |
323 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
35881 |
attaaaccaacttttaacttatattgttcatattgtagtggaattgttactctttattttggtttggccaaggccaaccccttcataggttttggatatc |
35782 |
T |
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| Q |
324 |
ccttccacaagggccataagaaccatgatatggacctcactcgaaaccttaatggaataatgactccctaaaggtaatctagaccatcctgttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35781 |
tcttccacaagggccataagaaccatgatatggacctcactcgaaaccttactggaataatgactccctaaaggtaatctagaccatcctgttc |
35688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 36 - 417
Target Start/End: Original strand, 12484398 - 12484789
Alignment:
| Q |
36 |
gtgaatatccaattttttggtgaattgacattgcttat------------ataacacacggacggacacacacacatatatcatctattaatttttatct |
123 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12484398 |
gtgaatatccaaatttttggtgaattgacattgcttatttatcatggaatataacacacggacggacacacaca--tatatcatctattaatttttatct |
12484495 |
T |
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| Q |
124 |
cttatcctagtgtcaaggcaatcactaatgtttttgtcttattgnnnnnnnattgtgcttattttatcgtatatagttnnnnnnnnttgaaaataccaca |
223 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12484496 |
attattctagtgtcaaggtgatcactaatgtttttgtcttattgtttttttattgtgcttattttatcgtatatagttaaaaaaaattgaaaataccaca |
12484595 |
T |
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| Q |
224 |
attaaatcaacttttaacttatattgttcatattgtagtggaattgttactctttattctggtttggccaaggccaaccccttgataggttttggatatc |
323 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
12484596 |
attaaaccaacttttaacttatattgttcatattgtagtggaattgttactctttattttggtttggccaaggccaaccccttcataggttttggatatc |
12484695 |
T |
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| Q |
324 |
ccttccacaagggccataagaaccatgatatggacctcactcgaaaccttaatggaataatgactccctaaaggtaatctagaccatcctgttc |
417 |
Q |
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| T |
12484696 |
tcttccacaagggccataagaaccatgatatggacctcactcgaaaccttactggaataatgactccctaaaggtaatctagaccatcctgttc |
12484789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 89 - 416
Target Start/End: Original strand, 12465692 - 12466025
Alignment:
| Q |
89 |
acacacacacatatatcatctattaatttttatctct--tatcctagtgtcaaggcaatcactaatgtttttgtcttattgnnnnnnnattgtgcttatt |
186 |
Q |
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||||||| | || |||||||||||||||||||| | | ||| |||||||||| || ||||||||||| |||||| ||||| |||||||||||| |
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| T |
12465692 |
acacacatatatttatcatctattaatttttatttatattatgctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttt-attgtgcttatt |
12465790 |
T |
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| Q |
187 |
ttatcgtatatagttnnnnnnnntt-----gaaaataccacaattaaatcaacttttaacttatattgttcatattgtagtggaattgttactctttatt |
281 |
Q |
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| T |
12465791 |
ttatcgtatatagttataattttttttttggaaaatatcacaatcaaatcaacttttaacttatattgttcatatcgtagtggaattgttactctttatt |
12465890 |
T |
|
| Q |
282 |
ctggtttggccaaggccaaccccttgataggttttggatatcccttccacaagggccataagaaccatgatatggacctcactcgaaaccttaatggaat |
381 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| | |||||| |
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| T |
12465891 |
ctggtttggccaaggttaacccgttgataggttttggatatcccttccacaagggccatgagaatcatgatatggacctcactcaaaaccgcactggaat |
12465990 |
T |
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| Q |
382 |
aatgactccctaaaggtaatctagaccatcctgtt |
416 |
Q |
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| T |
12465991 |
aatgaccccctgatgtcaatctagaccatcctgtt |
12466025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 89 - 416
Target Start/End: Original strand, 12468331 - 12468664
Alignment:
| Q |
89 |
acacacacacatatatcatctattaatttttatctct--tatcctagtgtcaaggcaatcactaatgtttttgtcttattgnnnnnnnattgtgcttatt |
186 |
Q |
| |
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||||||| | || ||||||| |||||||||||| | | ||| |||||||||| || ||||||||||| |||||| ||||| |||||||| ||| |
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| T |
12468331 |
acacacatatatctatcatcgattaatttttatttatattatgctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttttattgtgctgatt |
12468430 |
T |
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| Q |
187 |
ttatcgtatatagttnnnnnnnnttg----aaaataccacaattaaatcaacttttaacttatattgttcatattgtagtggaattgttactctttattc |
282 |
Q |
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| T |
12468431 |
ttatcgtatatagttataatttttttttgtaaaataacacaatcaaatcaacttttaacttatattgttcatattgtagtggaattgttgctctttattc |
12468530 |
T |
|
| Q |
283 |
tggtttggccaaggccaaccccttgataggttttggatatcccttccacaagggccataagaaccatgatatggacctcactcgaaaccttaatggaata |
382 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||| |
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| T |
12468531 |
tggtttggccaaggccaacccgttaataggttttggatatcccttccacaagggccatgagaatcatgatatggacctcactcgaaaccgcactggaata |
12468630 |
T |
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| Q |
383 |
atgactccctaaaggtaatctagaccatcctgtt |
416 |
Q |
| |
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||||| |||| || ||||||||||||| |||| |
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| T |
12468631 |
atgaccccctggtggcaatctagaccatcatgtt |
12468664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 254780 - 254835
Alignment:
| Q |
216 |
ataccacaattaaatcaacttttaacttatattgttcatattgtagtggaattgtt |
271 |
Q |
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|||||||||| |||| || ||||||||||||||||||| ||| |||||||||||| |
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| T |
254780 |
ataccacaatcaaataaagatttaacttatattgttcatgttgcagtggaattgtt |
254835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 29372519 - 29372580
Alignment:
| Q |
290 |
gccaaggccaaccccttgataggttttggatatcccttccacaagggccataagaaccatga |
351 |
Q |
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| T |
29372519 |
gccaaggcccaacccttgataggttatggatatcccttccatagggcctataaggaccatga |
29372580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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