View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_low_5 (Length: 382)
Name: NF4407_low_5
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 20590796 - 20590480
Alignment:
| Q |
4 |
caatgatgaaaggtggttttatgtagctagtagcttaatcaggaaggaacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaa |
103 |
Q |
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| T |
20590796 |
caatgatgaaaggtggttttatgtagccagtagcttaacgaggaaggaacaagaacatggaatgaatcatggttgaactctttgaaacagaacaatgaaa |
20590697 |
T |
|
| Q |
104 |
gaaatggtttttataatgatcaaaggagggtttgatgaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaa |
203 |
Q |
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| T |
20590696 |
gaaatggtttttataatgattaaaggagggtttgatgaaagggtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcatagaaaa |
20590597 |
T |
|
| Q |
204 |
atgggtgtgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaata |
303 |
Q |
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|||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20590596 |
atgggtgtgtttgacatacaaacatattgtaactaactcgtcaatttgaatttttgtttcgttgttctgacccttcattttgcaattggcttttcaaata |
20590497 |
T |
|
| Q |
304 |
aatttcaaatattatca |
320 |
Q |
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||||| ||||||||||| |
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| T |
20590496 |
aattttaaatattatca |
20590480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 318
Target Start/End: Complemental strand, 20621672 - 20621362
Alignment:
| Q |
4 |
caatgatgaaaggtggttttatgtagctagtagcttaatcaggaaggaacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaa |
103 |
Q |
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||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
20621672 |
caatgatgaaaggtggttt-atgtagccaatagcttaatgaggaaggaacaagaaaatggaatgaataatggtgaagctctttgaaacataacaatgaaa |
20621574 |
T |
|
| Q |
104 |
gaaatggtttttataatgatcaaaggagggtttgatgaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaa |
203 |
Q |
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| T |
20621573 |
gaaatggttttgataatgatcaaaggagggtttgatgaaagagtttgtttttgtag-tttattgtgaaggaagctttgacattttaaatttcattgaaaa |
20621475 |
T |
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| Q |
204 |
atgggtgtgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaata |
303 |
Q |
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|||| |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20621474 |
atgg--gtgtttgacatacaaacatattgtaactaactcatcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaata |
20621377 |
T |
|
| Q |
304 |
aatttcaaatattat |
318 |
Q |
| |
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| T |
20621376 |
aatttcaaatattat |
20621362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 12057634 - 12057946
Alignment:
| Q |
4 |
caatgatgaaaggtggttttatgtagctagtagcttaatcaggaaggaacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaa |
103 |
Q |
| |
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||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||| |
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| T |
12057634 |
caatgatgaaacgtggttttatgtagccaatagcttaatgaggaaggaacaagaaaatggaatgaataatggttgagctctttgaaacagaacaataaaa |
12057733 |
T |
|
| Q |
104 |
gaaatggtttttataatgatcaaaggagggtttgatgaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaa |
203 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
12057734 |
gaaatggttttgataatgatcaaaggagggttagatgaaagagtttgtttttgtagctttaatgtaaaggaagctttgacattttaaatttcattgaaaa |
12057833 |
T |
|
| Q |
204 |
atgggtgtgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaata |
303 |
Q |
| |
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|||| |||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
12057834 |
atgg--gtgtttgacatacaaacatattgtaactaactcatcaatttgaatttttgtttcgttgttctgacccttcattttgcaattggcttatcaaata |
12057931 |
T |
|
| Q |
304 |
aatttcaaatattat |
318 |
Q |
| |
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||||||||||||||| |
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| T |
12057932 |
aatttcaaatattat |
12057946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 20632311 - 20632184
Alignment:
| Q |
189 |
aaatttcattgaaaaatgggtgtgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaa |
288 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||| | ||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
20632311 |
aaatttcattgaaaaatgggtgt--ttgacatacaaatatattgtaactaactcatcaatttgaatttttgtttcgtggttctgacccttcattttgcaa |
20632214 |
T |
|
| Q |
289 |
ttggcttttcaaataaatttcaaatattat |
318 |
Q |
| |
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|||| ||||||||||||||||||||||||| |
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|
| T |
20632213 |
ttggtttttcaaataaatttcaaatattat |
20632184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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