View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_low_9 (Length: 306)
Name: NF4407_low_9
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_low_9 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 10887554 - 10887843
Alignment:
| Q |
17 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatc |
116 |
Q |
| |
|
||||||||| || |||||||| ||||| |||||||| || || ||||||||||||||||||||||||||||| || || || |||||||||||||||||| |
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| T |
10887554 |
acaaccttcggttgttgccatgggcaccgtgtattcattcccgtcgagcaacaaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatc |
10887653 |
T |
|
| Q |
117 |
tcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10887654 |
tcgcaacactgtcctaatatagaatcgtagtcaaaacctttcatcggtaaaccttcaagtgaccttccggtaaccctctccactgcttggttcctaatct |
10887753 |
T |
|
| Q |
217 |
ttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaattgatcccgataccaccgcaccgacaacctcttcgtctt |
306 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10887754 |
ttgctgcacgacggcaatctccgagcttcgactcaagggagtaagaaggaattgatcccgataccactgcaccgacaacctcttcgtctt |
10887843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 10866811 - 10866522
Alignment:
| Q |
17 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatc |
116 |
Q |
| |
|
||||||||| || |||||||| ||||| ||||| || || || ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
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| T |
10866811 |
acaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatc |
10866712 |
T |
|
| Q |
117 |
tcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatct |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
10866711 |
tcgcaacactgtcctaatatagaattgtagtcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaatat |
10866612 |
T |
|
| Q |
217 |
ttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaattgatcccgataccaccgcaccgacaacctcttcgtctt |
306 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||||| |||||||| ||||||||||| || ||||| |||| ||||||||| ||||||| |
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| T |
10866611 |
ttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtctt |
10866522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 10873494 - 10873783
Alignment:
| Q |
17 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatc |
116 |
Q |
| |
|
||||||||| || |||||||| ||||| ||||| || || || ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| |
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|
| T |
10873494 |
acaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatc |
10873593 |
T |
|
| Q |
117 |
tcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
10873594 |
tcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatat |
10873693 |
T |
|
| Q |
217 |
ttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaattgatcccgataccaccgcaccgacaacctcttcgtctt |
306 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||||| |||||||| ||||||||||| || ||||| |||| ||||||||| ||||||| |
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| T |
10873694 |
ttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtctt |
10873783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 10878565 - 10878854
Alignment:
| Q |
17 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatc |
116 |
Q |
| |
|
||||||||| || |||||||| ||||| ||||| || || || ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| |
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|
| T |
10878565 |
acaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatc |
10878664 |
T |
|
| Q |
117 |
tcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
10878665 |
tcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatat |
10878764 |
T |
|
| Q |
217 |
ttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaattgatcccgataccaccgcaccgacaacctcttcgtctt |
306 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||||| |||||||| ||||||||||| || ||||| |||| ||||||||| ||||||| |
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| T |
10878765 |
ttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtctt |
10878854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 10883636 - 10883925
Alignment:
| Q |
17 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatc |
116 |
Q |
| |
|
||||||||| || |||||||| ||||| ||||| || || || ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| |
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| T |
10883636 |
acaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatc |
10883735 |
T |
|
| Q |
117 |
tcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
10883736 |
tcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatat |
10883835 |
T |
|
| Q |
217 |
ttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaattgatcccgataccaccgcaccgacaacctcttcgtctt |
306 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||||| |||||||| ||||||||||| || ||||| |||| ||||||||| ||||||| |
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|
| T |
10883836 |
ttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtctt |
10883925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 39676375 - 39676094
Alignment:
| Q |
17 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| |
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| T |
39676375 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatc |
39676276 |
T |
|
| Q |
117 |
tcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatct |
216 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
39676275 |
tcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatca |
39676176 |
T |
|
| Q |
217 |
ttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaattgatcccgataccaccgcaccgacaacctc |
298 |
Q |
| |
|
|| ||||| ||||||||||| ||||| || ||||| |||||||| ||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
39676175 |
cagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctc |
39676094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 10046431 - 10046150
Alignment:
| Q |
17 |
acaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatc |
116 |
Q |
| |
|
||||||||| || |||||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||| |
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|
| T |
10046431 |
acaaccttccgtcgttgccatcggcaccgtgtactctttcccatcaagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatc |
10046332 |
T |
|
| Q |
117 |
tcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatct |
216 |
Q |
| |
|
|| ||||||||||||||||| ||||| || |||||||||||||| |||| ||| |||||| ||||||||||||||||||| |||||||| | ||| |
|
|
| T |
10046331 |
tcacaacactgtcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcg |
10046232 |
T |
|
| Q |
217 |
ttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaattgatcccgataccaccgcaccgacaacctc |
298 |
Q |
| |
|
|| ||||| |||||||||||| ||||| ||||| ||||| |||||||||| || | ||||||||||| ||||||||| |
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|
| T |
10046231 |
ccgccgcacgtttgcaatctccgagttttgattcaagcgagtatgacggaattgtaccggttaccaccgcacggacaacctc |
10046150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 30709537 - 30709688
Alignment:
| Q |
21 |
ccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgc |
120 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || ||||| | ||||| ||||| |||||||| || || || || |||||||||||||||||||| | |
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|
| T |
30709537 |
ccttcagtggtagccatgggcacagtgtactcaactccatctaacaacagtggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcac |
30709636 |
T |
|
| Q |
121 |
aacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttc |
172 |
Q |
| |
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|||||||||| ||||| |||||||| ||||||||||||| ||||| |||||| |
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|
| T |
30709637 |
aacactgtcccaatatcgaatcgtaatcaaaaccttccaacggtaaaccttc |
30709688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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