View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4409-Insertion-1 (Length: 816)

Name: NF4409-Insertion-1
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4409-Insertion-1
NF4409-Insertion-1
[»] chr4 (1 HSPs)
chr4 (7-816)||(40706480-40707289)


Alignment Details
Target: chr4 (Bit Score: 766; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 7 - 816
Target Start/End: Original strand, 40706480 - 40707289
Alignment:
Q  7 agaatgcagttggccaatcaggtatgcatacttgcgcctgcattgcgtctcttaatgcaagttcagcctgatcattcatcaagtaggcgaaggctctcct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706480 agaatgcagttggccaatcaggtatgcatacttgcgcctgcattgcgtctcttaatgcaagttcagcctgatcattcatcaagtaggcgaaggctctcct 40706579  T
Q  107 tgcaaacacggttgcggatggaacagacatcataaccaccaactgtttaaaatcaaagaaatcaaatgcatttagactatgctcaactttcgcagtgaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706580 tgcaaacacggttgcggatggaacagacatcataaccaccaactgtttaaaatcaaagaaatcaaatgcatttagactatgctcaactttcgcagtgaat 40706679  T
Q  207 cataataactcatgataaacactcagcaaaactaaggatgttcagcaacaagttttgatcacaacatgttcttctggtgtacaaatttggcattctgaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706680 cataataactcatgataaacactcagcaaaactaaggatgttcaacaacaggttttgatcacaacatgttcttctggtgtacaaatttggcattctgaat 40706779  T
Q  307 ttaagggttataaggactgcaacaaattccgttcaagacctttggtacaaaaacaagccataatattttactggaaatagatgccatgcattggaagaat 406  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706780 ttaagggttataaggactgcaacattttccgtacaagacctttggtacaaaaacaagccataatattttactggaaatagatgccatgcattggaagaat 40706879  T
Q  407 acaatagaagtgtctcaaacacactctataaaccacaatgaaaagtgaaacagtgcatttaccttggaataatactcaattgcatttttgaaatccttat 506  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706880 acaatagaagtgtctcaaccacactctataaaccacaatgaaaagtgaaacagtgcatttaccttggaataatactcaattgcatttttgaaatccttat 40706979  T
Q  507 ctctaaatgcaatatcgccaaactttttcgtgtttaagatgtcctgcacttgttgtgtccactcttgaaatgaaagctgcaattacatttttactcatta 606  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706980 ctctaaatgcaatatcgccaaacttttttgtgtttaagatgtcctgcacttgttgtgtccactcttgaaatgaaagctgcaattacatttttactcatta 40707079  T
Q  607 gccaagagcaaccgaaaaaagtgaccataataacagctcatatttaatgagcaatacttcattaaatgaaccaaccttattgacacatatcctaattcct 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40707080 gccaagagcaaccgaaaaaagtgaccataataacagctcatatttaatgagcaatacttcattaaatgaaccaaccctattgacacatatcctaattcct 40707179  T
Q  707 aatgaggacatcggtatctgaaagataattgattaaaccaaaatgttgtaggcaaaatatggtgaactgaaatacctcattttctgcaccttcctcatct 806  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40707180 aatgagaacatcggtatctcaaagataattgattaaaccaaaatgttgtaggcaaaatatggtgaactgaaatacctcattttctgcaccttcctcatct 40707279  T
Q  807 ttatatccgg 816  Q
    ||||| ||||    
T  40707280 ttataaccgg 40707289  T

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