View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4409-Insertion-2 (Length: 834)

Name: NF4409-Insertion-2
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4409-Insertion-2
NF4409-Insertion-2
[»] chr1 (14 HSPs)
chr1 (8-834)||(40394704-40395538)
chr1 (557-634)||(7218092-7218170)
chr1 (557-595)||(17628573-17628611)
chr1 (561-634)||(25479559-25479633)
chr1 (557-634)||(33723400-33723478)
chr1 (557-608)||(40304099-40304150)
chr1 (557-634)||(36151523-36151601)
chr1 (557-600)||(7273992-7274035)
chr1 (557-600)||(15361687-15361730)
chr1 (557-600)||(25006087-25006130)
chr1 (557-600)||(49517044-49517087)
chr1 (557-634)||(28262637-28262714)
chr1 (559-635)||(25005814-25005891)
chr1 (562-630)||(44422678-44422747)
[»] chr6 (14 HSPs)
chr6 (558-634)||(31671092-31671169)
chr6 (557-634)||(281866-281944)
chr6 (557-635)||(4006688-4006767)
chr6 (557-599)||(5550106-5550148)
chr6 (558-600)||(33787798-33787840)
chr6 (560-635)||(25100020-25100096)
chr6 (557-600)||(29274282-29274325)
chr6 (557-634)||(1497955-1498033)
chr6 (557-634)||(6647361-6647439)
chr6 (557-634)||(9093574-9093652)
chr6 (557-634)||(18264303-18264381)
chr6 (562-635)||(24782038-24782112)
chr6 (561-634)||(32386581-32386655)
chr6 (557-602)||(22691571-22691616)
[»] chr2 (16 HSPs)
chr2 (557-631)||(33256714-33256789)
chr2 (558-634)||(22681203-22681280)
chr2 (557-634)||(33942124-33942202)
chr2 (570-635)||(43985020-43985086)
chr2 (583-635)||(9174815-9174868)
chr2 (564-600)||(7937002-7937038)
chr2 (557-600)||(11513872-11513915)
chr2 (557-600)||(15377739-15377782)
chr2 (557-600)||(18066102-18066145)
chr2 (557-634)||(29633046-29633125)
chr2 (577-634)||(4026811-4026869)
chr2 (564-598)||(11863705-11863739)
chr2 (557-633)||(9556213-9556290)
chr2 (583-627)||(10884546-10884591)
chr2 (559-600)||(37276722-37276763)
chr2 (570-634)||(41950054-41950119)
[»] chr8 (21 HSPs)
chr8 (558-600)||(10076329-10076371)
chr8 (557-629)||(10075574-10075647)
chr8 (576-635)||(8060662-8060722)
chr8 (557-631)||(11415128-11415203)
chr8 (558-635)||(8062499-8062577)
chr8 (561-599)||(9699979-9700017)
chr8 (557-634)||(26284813-26284891)
chr8 (557-635)||(29699228-29699305)
chr8 (559-600)||(12361168-12361209)
chr8 (559-635)||(30013194-30013271)
chr8 (557-597)||(13561368-13561408)
chr8 (557-635)||(6509320-6509399)
chr8 (560-634)||(7645955-7646030)
chr8 (558-600)||(4511003-4511045)
chr8 (557-634)||(28784813-28784891)
chr8 (557-634)||(31862467-31862545)
chr8 (559-628)||(34551096-34551166)
chr8 (558-600)||(43704431-43704473)
chr8 (557-602)||(1470907-1470952)
chr8 (583-635)||(27028831-27028884)
chr8 (557-629)||(29056014-29056087)
[»] chr7 (15 HSPs)
chr7 (557-634)||(31338482-31338560)
chr7 (557-637)||(21453268-21453349)
chr7 (558-634)||(38010689-38010766)
chr7 (557-595)||(3802197-3802235)
chr7 (557-626)||(30456476-30456546)
chr7 (557-634)||(44821933-44822011)
chr7 (559-600)||(25296960-25297001)
chr7 (559-618)||(28340878-28340938)
chr7 (557-600)||(9527143-9527186)
chr7 (568-634)||(27378846-27378913)
chr7 (557-634)||(3500985-3501062)
chr7 (569-634)||(4966142-4966208)
chr7 (557-626)||(17989049-17989119)
chr7 (566-634)||(7521255-7521324)
chr7 (557-590)||(35536081-35536114)
[»] chr5 (11 HSPs)
chr5 (557-634)||(28586784-28586862)
chr5 (559-634)||(10272449-10272525)
chr5 (562-634)||(16328845-16328917)
chr5 (559-634)||(41957469-41957545)
chr5 (557-634)||(8985635-8985713)
chr5 (557-602)||(32059640-32059685)
chr5 (567-635)||(31688024-31688092)
chr5 (557-600)||(8938620-8938663)
chr5 (584-634)||(17258901-17258952)
chr5 (583-632)||(3237093-3237143)
chr5 (557-633)||(41016153-41016230)
[»] scaffold0024 (1 HSPs)
scaffold0024 (557-600)||(27550-27593)
[»] chr4 (7 HSPs)
chr4 (557-596)||(42321936-42321975)
chr4 (557-634)||(10192258-10192335)
chr4 (557-634)||(49219113-49219191)
chr4 (560-634)||(2996550-2996625)
chr4 (557-600)||(3175925-3175968)
chr4 (572-634)||(11264290-11264353)
chr4 (558-600)||(10812483-10812525)
[»] chr3 (13 HSPs)
chr3 (557-635)||(52618977-52619056)
chr3 (562-634)||(33306741-33306814)
chr3 (559-634)||(1217818-1217894)
chr3 (557-632)||(23315600-23315676)
chr3 (568-634)||(20502086-20502153)
chr3 (565-600)||(20874357-20874392)
chr3 (557-600)||(36783387-36783430)
chr3 (557-634)||(21367641-21367719)
chr3 (557-634)||(24887301-24887379)
chr3 (557-634)||(25453877-25453955)
chr3 (557-634)||(38462255-38462333)
chr3 (557-599)||(51197790-51197832)
chr3 (557-629)||(3182385-3182458)
[»] scaffold0020 (1 HSPs)
scaffold0020 (573-634)||(159991-160053)
[»] scaffold0044 (1 HSPs)
scaffold0044 (557-598)||(52005-52046)


Alignment Details
Target: chr1 (Bit Score: 677; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 834
Target Start/End: Complemental strand, 40395538 - 40394704
Alignment:
Q  8 ccaaatacttggattctgttgttgctatttcttgaaaacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40395538 ccaaatacttggattctgttgttgctatttcttgaaaacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagat 40395439  T
Q  108 cctttagacagtgaatatgagatnnnnnnncactgacagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacct 207  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40395438 cctttagacagtgaatatgagataaaaaaacactgacagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacct 40395339  T
Q  208 catattgacatttgacaggtatctgttatggcttattataatagtaaaggaacctactttctgtttcattttgaannnnnnn-atggtttaatcaggttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  40395338 catattgacatttgacaggtatctgttatggcttattataatagtaaaggaacctactttctgtttcattttgaattttttttatggtttaatcaggttt 40395239  T
Q  307 atttctttataaaaatttcattttctcccaaaaatttatatgcttgcattgtaattcacacttttctttaacagccaattggaatctgacagctcatgcn 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40395238 atttctttataaaaatttcattttctcccaaaaatttatatgcttgcattgtaattcacacttttctttaacagccaattggaatctgacagctcatgct 40395139  T
Q  407 nnnnnnnngggtcagctgtcttacaaagtactacataataacatagataattaggcactttttggataaacaacttaatttacctcttatcatcataagt 506  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40395138 ttttttttgggtcagctgtcttacaaagtactacataataacatagataattaggcactttttggataaacaacttaatttacctcttatcatcataagt 40395039  T
Q  507 ctatattatatagttgcttacgtataagctatttatataacnnnnnnnnntaaa-------gtcaaattgttttcatataaattataagctgttttcata 599  Q
     ||||||||||||||||||||||||||||||||||||||||          |||       || ||||||||||||||||||||||||| ||||||||||    
T  40395038 ttatattatatagttgcttacgtataagctatttatataaccaaaaaaaaaaaaaaaaaaagttaaattgttttcatataaattataagttgttttcata 40394939  T
Q  600 accatcctatagagcttatgaaaataagctgaaaatggatccgacatgtcatatttttataaactatctcaaacagtctcgcaaatgattatttcattag 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40394938 accatcctatagagcttatgaaaataagctgaaaatggatccgacatgtcatatttttataaactatctcaaacagtctcgcaaatgattatttcattag 40394839  T
Q  700 ataaatttaaacaagtcaattcaaacgaacgccgatcttcgtttcttgcagccacttccttaatctaagacctttattttcatgctttgtaattatttgg 799  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40394838 ataaatttaaacaagtcaattcaaacgaacaccaatcttcgtttcttgcagccacttccttaatctaagacctttattttcatgctttgtaattatttgg 40394739  T
Q  800 ggtattgttctttgttgtgattaataatcatgtga 834  Q
    ||||||||||||| |||||||||||||||||||||    
T  40394738 ggtattgttcttttttgtgattaataatcatgtga 40394704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 7218170 - 7218092
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||| |||||  ||| |||||||||||||| ||||||    
T  7218170 taaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaa 7218092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 595
Target Start/End: Original strand, 17628573 - 17628611
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgtttt 595  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17628573 taaagtcaaattgttttcatataaattataagctgtttt 17628611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 634
Target Start/End: Original strand, 25479559 - 25479633
Alignment:
Q  561 gtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| ||||||||   |||||| ||||||||||| | |||||| |||||||||||||||||||||||||    
T  25479559 gtcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaa 25479633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 33723478 - 33723400
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||||||||||||||| ||| | |||||||||||| | | ||| || |||||||| ||||||||||||||    
T  33723478 taaagtcaaattgttttcatataaactatgaactgttttcataagctaccctgtaaagcttatggaaataagctgaaaa 33723400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 557 - 608
Target Start/End: Complemental strand, 40304150 - 40304099
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataaccatccta 608  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  40304150 taaaatcacattgttttcatataagttataagctgttttcataactatccta 40304099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 36151601 - 36151523
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||||||| ||||| ||||||  ||||||| | ||| ||||||  ||||||||||||||||| ||||||    
T  36151601 taaagtcaaattgttttcgtataagttataaattgttttcgtaaacaatcctagtgagcttatgaaaataagttgaaaa 36151523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 7274035 - 7273992
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||| || ||||||||||||| |||||    
T  7274035 taaagtcaaattgttttcatacaagttataagctgtttccataa 7273992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 15361687 - 15361730
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||||||| |||||||||||  ||||||||||||||||||    
T  15361687 taaagtcaaattattttcatataagctataagctgttttcataa 15361730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 25006130 - 25006087
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  25006130 taaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 49517044 - 49517087
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||||||||||||||| |||  ||||||||||||||||||    
T  49517044 taaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 28262714 - 28262637
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||   |||||||||| |||||| ||||||||| ||||    
T  28262714 taaactcaaattgttttcatctaa-ttctaagctgttttcataagttatcctatagaacttatggaaataagctaaaaa 28262637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 635
Target Start/End: Complemental strand, 25005891 - 25005814
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaat 635  Q
    ||||||| ||||||||||||||  |||||| ||||||||||| | |||||  ||||||||| |||| ||||| |||||    
T  25005891 aagtcaacttgttttcatataagctataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaat 25005814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 630
Target Start/End: Original strand, 44422678 - 44422747
Alignment:
Q  562 tcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctg 630  Q
    ||||| |||||||||||||  |||||||| |||| |||| | |||||  |||||||||||||||||||||    
T  44422678 tcaaactgttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagctg 44422747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 634
Target Start/End: Complemental strand, 31671169 - 31671092
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||| |||||||||||||||||  |||||||||||||| | ||| |||||| | |||||||||||||||||||||||    
T  31671169 aaagttaaattgttttcatataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaa 31671092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 281944 - 281866
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||| | |||||| |||||| ||| ||||||||||||||    
T  281944 taaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaa 281866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 557 - 635
Target Start/End: Original strand, 4006688 - 4006767
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaat 635  Q
    ||||||||||||||||| ||||||  |||||| ||||||||||| | ||||   |||| |||||||||||||||||||||    
T  4006688 taaagtcaaattgtttttatataagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaat 4006767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 599
Target Start/End: Original strand, 5550106 - 5550148
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcata 599  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  5550106 taaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 600
Target Start/End: Complemental strand, 33787840 - 33787798
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  33787840 aaagtcaaattgatttcatataagttataagctgttttcataa 33787798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 560 - 635
Target Start/End: Original strand, 25100020 - 25100096
Alignment:
Q  560 agtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||||||||||||||| || ||||||| ||||||||||| | ||| || |||||||||  ||||||| |||||||    
T  25100020 agtcaaattgttttcatagaagttataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaat 25100096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 29274325 - 29274282
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||    
T  29274325 taaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 1497955 - 1498033
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| ||||||||||| | |||||||  |||||||| ||| ||| |  |||||||||||||||||| ||||||    
T  1497955 taaagtcaaactgttttcatatgagttataagaagttttcataaactatcttggagagcttatgaaaataaggtgaaaa 1498033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 6647361 - 6647439
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||  ||| |||||  |||||| |||||||||||| | ||| || |||||||||||||||||| ||||||    
T  6647361 taaagtcaaattactttaatataggttataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaa 6647439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 9093652 - 9093574
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||| ||||||||||| |||||  |||||||||||||||||| |  || || ||| |||| ||||||||||||||||    
T  9093652 taaagttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 18264303 - 18264381
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||||||||||| || ||||||||| ||||| | ||| |||||  |||| ||||| |||||||| |||||    
T  18264303 taaagtcaaattgttttcatacaagttataagctattttcttaaactatcctgaagaggttatggaaataagcggaaaa 18264381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 562 - 635
Target Start/End: Original strand, 24782038 - 24782112
Alignment:
Q  562 tcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaat 635  Q
    ||||||||||||||||||| |||||||||  ||| || ||| |||||  ||||||||||||||||| || |||||    
T  24782038 tcaaattgttttcatataagttataagctactttaataaactatccttgagagcttatgaaaataaactaaaaat 24782112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 561 - 634
Target Start/End: Complemental strand, 32386655 - 32386581
Alignment:
Q  561 gtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||||||||||  |||| | ||||||||| |   |||||  |||||||||||||||||||||||||    
T  32386655 gtcaaattgttttcatataaggtatacgttgttttcattagttatcctggagagcttatgaaaataagctgaaaa 32386581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 22691616 - 22691571
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc 602  Q
    |||| ||||||||||||||||||| |||||| || |||||||||||    
T  22691616 taaattcaaattgttttcatataagttataacctattttcataacc 22691571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 631
Target Start/End: Original strand, 33256714 - 33256789
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctga 631  Q
    |||||||||| |||||||||||||| ||||||| |||||||||| |||||||  ||| | ||||||||||||||||    
T  33256714 taaagtcaaactgttttcatataaactataagcagttttcataagccatcctgaagaccgtatgaaaataagctga 33256789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 634
Target Start/End: Complemental strand, 22681280 - 22681203
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||| ||||||||||||||||||  |||||||||||||||||| | |||||| ||| |||||| ||||||||| ||||    
T  22681280 aaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaa 22681203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 33942124 - 33942202
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| ||||||||| |||  |||||| ||||||||||| ||||| || |||||| |||||||| |||||||||    
T  33942124 taaagtcaaactgttttcatgtaagctataagttgttttcataagccatcatagagagctaatgaaaattagctgaaaa 33942202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 635
Target Start/End: Complemental strand, 43985086 - 43985020
Alignment:
Q  570 ttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaat 635  Q
    ||||| ||||||||||||| ||||||||||| | ||| |  ||||||||||||||||||||||||||    
T  43985086 ttttcgtataaattataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaat 43985020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 9174815 - 9174868
Alignment:
Q  583 tataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||||||||||||||| | ||| || ||||||||||||||||||||||||||    
T  9174815 tataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaat 9174868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 600
Target Start/End: Original strand, 7937002 - 7937038
Alignment:
Q  564 aaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||||||||||| ||||||||||||||||||||    
T  7937002 aaattgttttcatatagattataagctgttttcataa 7937038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 11513872 - 11513915
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  11513872 taaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 15377739 - 15377782
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||| | ||||||||||||||| |||||||||||||||||||    
T  15377739 taaagttagattgttttcatataagttataagctgttttcataa 15377782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 18066102 - 18066145
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||| |||||||||||||||||  ||||||||||||||||||    
T  18066102 taaagttaaattgttttcatataagctataagctgttttcataa 18066145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 29633046 - 29633125
Alignment:
Q  557 taaagtcaaattgttttcat-ataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||||||||| || || |||||||| ||||||||| | |||||| | ||||||| |||||| ||||||||    
T  29633046 taaagtcaaattgttttcataattaactataagctcttttcataagctatcctaaatagcttatcaaaatatgctgaaaa 29633125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 577 - 634
Target Start/End: Original strand, 4026811 - 4026869
Alignment:
Q  577 ataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||||||||||| ||  |||||  ||| |||||||||||||||||||||    
T  4026811 ataaattataagctgttttcataaattatcctgaagaacttatgaaaataagctgaaaa 4026869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 564 - 598
Target Start/End: Complemental strand, 11863739 - 11863705
Alignment:
Q  564 aaattgttttcatataaattataagctgttttcat 598  Q
    ||||||||||||||||| |||||||||||||||||    
T  11863739 aaattgttttcatataatttataagctgttttcat 11863705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 633
Target Start/End: Original strand, 9556213 - 9556290
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaa 633  Q
    |||||||||  |||||||||| ||  ||||| |||||||||||| | |||||| | |||||||||||||||| |||||    
T  9556213 taaagtcaacgtgttttcatacaagctataaactgttttcataagctatcctagaaagcttatgaaaataagttgaaa 9556290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 627
Target Start/End: Complemental strand, 10884591 - 10884546
Alignment:
Q  583 tataagctgttttcataacc-atcctatagagcttatgaaaataag 627  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||    
T  10884591 tataagctgttttcataagctatcctagagagcttatgaaaataag 10884546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 600
Target Start/End: Original strand, 37276722 - 37276763
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||| ||||||||||||| ||||||| |||||||||||    
T  37276722 aagtcaaactgttttcatataagttataagttgttttcataa 37276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 634
Target Start/End: Original strand, 41950054 - 41950119
Alignment:
Q  570 ttttcatataaattataagctgttttcata-accatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||| ||||  |||||| |||  || ||||||||||||||||||||||||||| ||||    
T  41950054 ttttcatataaactatatcctgtttacattcactatcctatagagcttatgaaaataagcttaaaa 41950119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 600
Target Start/End: Complemental strand, 10076371 - 10076329
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  10076371 aaagtcaaattgttttcatataaattataagctgtttgcataa 10076329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 557 - 629
Target Start/End: Complemental strand, 10075647 - 10075574
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagct 629  Q
    |||||||||| | |||| |||||| ||||||||| ||||||||| | |||||| ||||||||||||||||||||    
T  10075647 taaagtcaaactatttttatataagttataagctattttcataagctatcctagagagcttatgaaaataagct 10075574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 635
Target Start/End: Original strand, 8060662 - 8060722
Alignment:
Q  576 tataaattataagctgttttcataacca-tcctatagagcttatgaaaataagctgaaaat 635  Q
    ||||| ||||||||||||||||||| || ||||| |||||||||| |||||||||||||||    
T  8060662 tataacttataagctgttttcataagcaatcctagagagcttatggaaataagctgaaaat 8060722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 557 - 631
Target Start/End: Original strand, 11415128 - 11415203
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctga 631  Q
    |||||||||||| |||| |||||| ||||| ||||||||||||| | |||||| |||| || ||||||||||||||    
T  11415128 taaagtcaaattatttttatataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctga 11415203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 635
Target Start/End: Original strand, 8062499 - 8062577
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||||||||||||||||||||  |||||| |||| |||||| | ||| || |||| |||||||||||||||| ||||    
T  8062499 aaagtcaaattgttttcatataagctataagatgttctcataagctatcttagagagtttatgaaaataagctggaaat 8062577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 599
Target Start/End: Original strand, 9699979 - 9700017
Alignment:
Q  561 gtcaaattgttttcatataaattataagctgttttcata 599  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  9699979 gtcaaattgttttcaaataaattataagctgttttcata 9700017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 26284891 - 26284813
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| |||||||||||||| || ||| ||||||| |||   ||||| || |||||||||||||||||||||||    
T  26284891 taaagtcaaactgttttcatataaagtacaagttgttttcgtaagttatcctgtatagcttatgaaaataagctgaaaa 26284813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 635
Target Start/End: Original strand, 29699228 - 29699305
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataaccatcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||||||| |||| |||| ||| |||||||||||||||| |   ||| |||||||||||||||| ||||||||||||    
T  29699228 taaagtcaaaatgttgtcatctaagttataagctgttttca-agttatcgtatagagcttatgaaattaagctgaaaat 29699305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 600
Target Start/End: Original strand, 12361168 - 12361209
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  12361168 aagtcaaattgttttcatataagctataagctgttttcataa 12361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 635
Target Start/End: Original strand, 30013194 - 30013271
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||||| ||||| |||||||  |||||||||||||||||| | ||||| |||| || ||| |||||||||||||||    
T  30013194 aagtcaaactgtttccatataagctataagctgttttcataagctatcctgtagaactaatggaaataagctgaaaat 30013271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 597
Target Start/End: Complemental strand, 13561408 - 13561368
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttca 597  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  13561408 taaagtcaaattgttttcatataaattataacttgttttca 13561368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 635
Target Start/End: Complemental strand, 6509399 - 6509320
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||||||||||| || ||||||  |||||||||||||||||| | |||||  |||||||||  ||||||| |||||||    
T  6509399 taaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttattgaaataaggtgaaaat 6509320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 634
Target Start/End: Original strand, 7645955 - 7646030
Alignment:
Q  560 agtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||||||| |||  |||||| ||||||||||| | | ||| || |||||||| ||||||||||||||    
T  7645955 agtcaaattgttttcatgtaagctataagttgttttcataagctaacctgtaaagcttatggaaataagctgaaaa 7646030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 600
Target Start/End: Original strand, 4511003 - 4511045
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||| || |||||||| |||||||||||||||||||    
T  4511003 aaagtcaaatttttctcatataagttataagctgttttcataa 4511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 28784891 - 28784813
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||||||| |||| | || |||||| ||||||||| | ||| || ||||||| | |||||||||||||||    
T  28784891 taaagtcaaattgttttgatatcagttgtaagctattttcataagctatcttagagagcttgtaaaaataagctgaaaa 28784813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 31862467 - 31862545
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| | || || |||||  |||||| |||||||||||   |||||| |||||||||||||||||||||||||    
T  31862467 taaagtcaaactattctcgtataagctataagatgttttcataagttatcctagagagcttatgaaaataagctgaaaa 31862545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 628
Target Start/End: Original strand, 34551096 - 34551166
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagc 628  Q
    |||||||||||||||||| ||| ||||||| ||||||| |||   |||||  |||||||||||||||||||    
T  34551096 aagtcaaattgttttcatttaagttataagttgttttcttaagttatcctggagagcttatgaaaataagc 34551166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 600
Target Start/End: Complemental strand, 43704473 - 43704431
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||| |||||||||||||| |||||| |||||||||||    
T  43704473 aaagtcaaactgttttcatataaactataagttgttttcataa 43704431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 1470952 - 1470907
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc 602  Q
    ||||||||||||  ||||||||||  ||||||||||||||||||||    
T  1470952 taaagtcaaattactttcatataagctataagctgttttcataacc 1470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 27028831 - 27028884
Alignment:
Q  583 tataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||||||||||||||| | ||| |  ||||||||||||||||||||||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaat 27028884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 629
Target Start/End: Complemental strand, 29056087 - 29056014
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagct 629  Q
    ||||||||| |||||||||||||| |||  | || ||||||||||| || ||  ||||||||||||||||||||    
T  29056087 taaagtcaatttgttttcatataagttagtaactattttcataacctattctcaagagcttatgaaaataagct 29056014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 31338482 - 31338560
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| |||||| |||||| ||||||| ||||| ||||| | ||||||| ||||||||||||||||| ||||||    
T  31338482 taaagtcaaactgtttttatataagttataagttgtttccataaactatcctatggagcttatgaaaataaggtgaaaa 31338560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 557 - 637
Target Start/End: Original strand, 21453268 - 21453349
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaatgg 637  Q
    ||||||||| ||||| ||||||||  ||||| |||||||||||| | |||||| |||||| ||||| |||||||||||||||    
T  21453268 taaagtcaagttgttctcatataagctataaactgttttcataagctatcctagagagctaatgaagataagctgaaaatgg 21453349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 634
Target Start/End: Original strand, 38010689 - 38010766
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||| ||||||||||||||||||  |||||||||||||||||| | |||||| ||| |||||| ||||||||| ||||    
T  38010689 aaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaa 38010766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 595
Target Start/End: Complemental strand, 3802235 - 3802197
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgtttt 595  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  3802235 taaagtcaaatcgttttcatataaattataagctgtttt 3802197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 626
Target Start/End: Complemental strand, 30456546 - 30456476
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataa 626  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||| ||| |  |||||||||||||||||    
T  30456546 taaagtcaaattgttttcatataagttataagtggttttcataaactatcttggagagcttatgaaaataa 30456476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 44821933 - 44822011
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| | || ||  ||| |||||||||||||| ||||||    
T  44821933 taaagtcaaattgtttttgtataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaa 44822011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 600
Target Start/End: Original strand, 25296960 - 25297001
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  25296960 aagttaaattgttttcatataaactataagctgttttcataa 25297001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 618
Target Start/End: Complemental strand, 28340938 - 28340878
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttat 618  Q
    ||||||||||||| ||||||||  |||||||||||||||||| | |||||| |||||||||    
T  28340938 aagtcaaattgttgtcatataagctataagctgttttcataagctatcctagagagcttat 28340878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 9527186 - 9527143
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||||| |||||||||||||| |||||| |||||||||||    
T  9527186 taaagtcaaactgttttcatataaactataagttgttttcataa 9527143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 634
Target Start/End: Complemental strand, 27378913 - 27378846
Alignment:
Q  568 tgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||| || || |||||||||||| | |||||  ||||||||||||||||| |||||||    
T  27378913 tgttttcatataaactacaatctgttttcataaactatcctggagagcttatgaaaataaactgaaaa 27378846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 3501062 - 3500985
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttca-taaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||  |||||||||||| |||||| ||| |||| |||| |||||||| ||| |||| ||||||||||||||    
T  3501062 taaagtcaaatcattttcatataaaatataagttgtattcattaactatcctata-agcgtatggaaataagctgaaaa 3500985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 634
Target Start/End: Original strand, 4966142 - 4966208
Alignment:
Q  569 gttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| |  |||||||||||||||||| |||||||  |||||||||| |||||| |||||||    
T  4966142 gttttcatattaggtataagctgttttcataagccatcctgaagagcttatggaaataaactgaaaa 4966208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 626
Target Start/End: Complemental strand, 17989119 - 17989049
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataa 626  Q
    |||||||||| |||||||||||||| |||||  ||||||||||| |  ||||  |||||||||||||||||    
T  17989119 taaagtcaaactgttttcatataaactataatttgttttcataagctctcctgaagagcttatgaaaataa 17989049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 634
Target Start/End: Original strand, 7521255 - 7521324
Alignment:
Q  566 attgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||  || | |||||||||||| |||| | |||||| ||||||| |||||||||||||||||    
T  7521255 attgttttcatgcaagtcataagctgttttaataaactatcctagagagcttctgaaaataagctgaaaa 7521324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 590
Target Start/End: Original strand, 35536081 - 35536114
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagct 590  Q
    |||||||||||||||||||||||| |||||||||    
T  35536081 taaagtcaaattgttttcatataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 28586862 - 28586784
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttca-taaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| |||||||||||||||||||||||||||| |  | | |||||| |||||||||  ||||||||||||||    
T  28586862 taaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttatcgaaataagctgaaaa 28586784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 10272525 - 10272449
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||||| |||||  |||||| ||||||||||| ||||| |  |||| ||||||||||||||||||||    
T  10272525 aagtcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaa 10272449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 634
Target Start/End: Original strand, 16328845 - 16328917
Alignment:
Q  562 tcaaattgttttcatataaattataagctgttttcataaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||| |||||||||||||||||||| |||||||| ||| |  |||  |||||||||| ||||||||||||||    
T  16328845 tcaaactgttttcatataaattataaactgttttcgtaagctacctggagagcttatggaaataagctgaaaa 16328917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 41957545 - 41957469
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||| ||||||||||||| ||| ||||||||||||||||||| | |||||  ||| |||||||||||||| ||||||    
T  41957545 aagttaaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaa 41957469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 8985635 - 8985713
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| | ||||||||||| ||  ||||| ||||||||| | ||||||||||||||||| ||| ||||||||||    
T  8985635 taaagtcaaactattttcatataatttgcaagctattttcataagctatcctatagagcttatggaaagaagctgaaaa 8985713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 32059685 - 32059640
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc 602  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||    
T  32059685 taaagtcaaactgttttcatataagctataagctgttttcataacc 32059640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 567 - 635
Target Start/End: Original strand, 31688024 - 31688092
Alignment:
Q  567 ttgttttcatataaattataagctgttttcataaccatcctatagagcttatgaaaataagctgaaaat 635  Q
    ||||||| ||||||| | ||||||||| ||||| | ||| | ||||||||||||||||||| |||||||    
T  31688024 ttgtttttatataaactttaagctgttctcatagctatcatgtagagcttatgaaaataagttgaaaat 31688092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 8938620 - 8938663
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||    
T  8938620 taaagtcacattgttttcatataagttataagcagttttcataa 8938663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 634
Target Start/End: Complemental strand, 17258952 - 17258901
Alignment:
Q  584 ataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||||||| | |||||  |||||||||||||||||||||||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaa 17258901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 3237093 - 3237143
Alignment:
Q  583 tataagctgttttcataacc-atcctatagagcttatgaaaataagctgaa 632  Q
    |||||||||||||||||| | |||||| |||||||||||||||| ||||||    
T  3237093 tataagctgttttcataagctatcctaaagagcttatgaaaatatgctgaa 3237143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 633
Target Start/End: Original strand, 41016153 - 41016230
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaa 633  Q
    |||| ||||| |||||||||||||  |||||| |||||||| || ||||| |  | ||||||||||||||||||||||    
T  41016153 taaattcaaactgttttcatataagctataagttgttttcacaagccatcatggaaagcttatgaaaataagctgaaa 41016230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 27550 - 27593
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  27550 taaagtcaaattgttttcatataaactataagttgttttcataa 27593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 557 - 596
Target Start/End: Complemental strand, 42321975 - 42321936
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttc 596  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42321975 taaagtcaaattgttttcatataaattataagttgttttc 42321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 10192258 - 10192335
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||||||||||||| ||||||| |||||||| || | |||||  ||||| |||||||||||| ||||||    
T  10192258 taaagtcaaattgttttcatataagttataagttgttttcaaaagctatcctggagagc-tatgaaaataagttgaaaa 10192335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 49219113 - 49219191
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||| |||||||||||  |||||| ||||||||| ||| ||| || |||| ||||| ||||||||||||||    
T  49219113 taaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaa 49219191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 634
Target Start/End: Original strand, 2996550 - 2996625
Alignment:
Q  560 agtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||| |||||| ||||||| ||||||||||| | ||| |  ||||| |||||||||||| ||||||    
T  2996550 agtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaa 2996625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 3175925 - 3175968
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||||||||||||||||  ||| |||||||||||||||||||    
T  3175925 taaagtcaaattgttttcaagtaagttataagctgttttcataa 3175968  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 634
Target Start/End: Original strand, 11264290 - 11264353
Alignment:
Q  572 ttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||  ||||||| ||||||||||| |||||||| |||||||||| ||||||| ||||||    
T  11264290 ttcatatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaa 11264353  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 600
Target Start/End: Original strand, 10812483 - 10812525
Alignment:
Q  558 aaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||||||||| |||||||  ||||||||||    
T  10812483 aaagtcaaattgttttcatataacttataagtagttttcataa 10812525  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 557 - 635
Target Start/End: Original strand, 52618977 - 52619056
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaat 635  Q
    |||||| ||||||||||||||||| |||||||||||||||| || | ||| |  ||||||| |||||||||| |||||||    
T  52618977 taaagttaaattgttttcatataagttataagctgttttcacaagctatcttgaagagcttgtgaaaataaggtgaaaat 52619056  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 634
Target Start/End: Complemental strand, 33306814 - 33306741
Alignment:
Q  562 tcaaattgttttcatataaattataagctgttttcat-aaccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||||||||||||  |||||||| ||||||| ||| || |||||||| |||| ||||||||| |||||    
T  33306814 tcaaattgttttcatataagctataagctattttcataaacaattctatagagattattaaaataagccgaaaa 33306741  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 1217894 - 1217818
Alignment:
Q  559 aagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||| ||||||||||||| ||| ||||||||||||||||||| | |||||  ||| ||||||||| |||| ||||||    
T  1217894 aagttaaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaagtaagatgaaaa 1217818  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 632
Target Start/End: Original strand, 23315600 - 23315676
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaa 632  Q
    |||||||||||||||||||||||   |||||| ||||| ||||| | || ||| |||||||||| ||||||||||||    
T  23315600 taaagtcaaattgttttcatataggctataagatgtttccataagctattctaaagagcttatggaaataagctgaa 23315676  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 634
Target Start/End: Complemental strand, 20502153 - 20502086
Alignment:
Q  568 tgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    ||||||||||||   |||||||||||||||||| | |||||  ||||||||||| |||||||||||||    
T  20502153 tgttttcatatacgctataagctgttttcataagctatcctgaagagcttatgagaataagctgaaaa 20502086  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 600
Target Start/End: Complemental strand, 20874392 - 20874357
Alignment:
Q  565 aattgttttcatataaattataagctgttttcataa 600  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20874392 aattgttttcatataaactataagctgttttcataa 20874357  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 36783430 - 36783387
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa 600  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||    
T  36783430 taaagtaaaattgttttcatataaactattagctgttttcataa 36783387  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 21367641 - 21367719
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||| ||||||||||| |||||  |||||| ||||||||||| | ||| |  ||| |||||||||||||||||||||    
T  21367641 taaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaa 21367719  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 24887379 - 24887301
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| ||| |||||||||  || ||||||||||||||| | |||||  ||||||||||  |||||||||||||    
T  24887379 taaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatgggaataagctgaaaa 24887301  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 25453955 - 25453877
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| ||||||| |||||  ||||| || ||||||||| | |||||  | |||||||||||||||||||||||    
T  25453955 taaagtcaaactgttttcgtataacctataacctattttcataaactatcctggaaagcttatgaaaataagctgaaaa 25453877  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 38462255 - 38462333
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||||| ||||||||||||   ||||| |||||||||||| | |||| | | |||||||| ||||||||||||||    
T  38462255 taaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagcttatggaaataagctgaaaa 38462333  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 599
Target Start/End: Complemental strand, 51197832 - 51197790
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcata 599  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||    
T  51197832 taaagacaaattgttttcatataagttataagttgttttcata 51197790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 629
Target Start/End: Complemental strand, 3182458 - 3182385
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcataa-ccatcctatagagcttatgaaaataagct 629  Q
    ||||||||||||||||||||| || ||||| ||||||||| ||| ||| ||||  |||| |||| |||||||||    
T  3182458 taaagtcaaattgttttcatacaagttataggctgttttcgtaagccaccctaatgagcatatggaaataagct 3182385  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 573 - 634
Target Start/End: Complemental strand, 160053 - 159991
Alignment:
Q  573 tcatataaattataagctgttttcataacc-atcctatagagcttatgaaaataagctgaaaa 634  Q
    |||||||| ||||||| ||||||||||| | |||||| ||||||| || ||||||||||||||    
T  160053 tcatataagttataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaa 159991  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 598
Target Start/End: Complemental strand, 52046 - 52005
Alignment:
Q  557 taaagtcaaattgttttcatataaattataagctgttttcat 598  Q
    |||||| |||||||||||||||||  ||||||||||||||||    
T  52046 taaagtgaaattgttttcatataagctataagctgttttcat 52005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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