View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409-Insertion-4 (Length: 209)
Name: NF4409-Insertion-4
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 32360718 - 32360594
Alignment:
| Q |
8 |
ctgtcctcgtcttaaggatgagttatttccattgtaaatatatatctttgattttgttccttaatacaaaaaattaaattcatttactacctcattgaaa |
107 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32360718 |
ctgtcctcctcttaaggatgagttatttccattgtaaatatatatctttgattatgttccttaatacaaaaaataaaattcatttactacctcattgaaa |
32360619 |
T |
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| Q |
108 |
ttattcaattttaatccctgagttt |
132 |
Q |
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| T |
32360618 |
ttattcaattttaatccctgagttt |
32360594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 32372868 - 32372789
Alignment:
| Q |
8 |
ctgtcctcgtcttaaggatgagttatttccattgtaaatatatatctttgattttgttccttaatacaaaaaattaaatt |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32372868 |
ctgtcctcgtcttaaggatgagttatttccattgtaaatatatatctttgattttgttccttaatacaaaaaataaaatt |
32372789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 32372654 - 32372578
Alignment:
| Q |
133 |
tatgtttatgtcatcaaatttcggttactccaaatgaaaatagtatcttccatatatatgccatatttcttacttca |
209 |
Q |
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| T |
32372654 |
tatgtttatgtcatcaaatttcggttactccaaatgaaaatagtatcttccattcatatgccatatttctaacttca |
32372578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 32359394 - 32359316
Alignment:
| Q |
135 |
tgtttatgtcatcaaatttcgg-ttactc---caaatgaaaatagtatcttccatatatatg-ccatatttcttacttca |
209 |
Q |
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| T |
32359394 |
tgtttatgtcatcaaattttggtttactccatcaaatg-aaatagtatcttcaatacatatgcccatatttcttacttca |
32359316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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