View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4409_high_1 (Length: 674)
Name: NF4409_high_1
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4409_high_1 |
| |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 232 - 658
Target Start/End: Original strand, 42238401 - 42238824
Alignment:
Q |
232 |
aaatcattttcttcggatgaatgaaagtttatatgagttggacttcaaatactaccaaagacggattttaaagttcatagatagagcgttaatatagtat |
331 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||| |
|
|
T |
42238401 |
aaatcattttcttcggatgaatgaaagtttatatgagttgaacttcaaatactatcaaagacggattttaaagctcatagatagagcgttaacatggtat |
42238500 |
T |
|
Q |
332 |
ttaccaattaaccaccaaaaagagcactacgctcaccgcagaaattgaactttcatttgcataggctataagtcaacttcttatcaactggataagacaa |
431 |
Q |
|
|
||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||| |
|
|
T |
42238501 |
ttaccgattaaccaccaaaaagagcactacgctaactgcagaaattgaactttcgcttgcataggctataagtcaacttcttaccaaccgaataagacaa |
42238600 |
T |
|
Q |
432 |
attcgatttctatatgtgagcactcaaacatgtcaaaatgaattatacactactacaatatctgtaaactgcatattgtatctaagtcattatttca-at |
530 |
Q |
|
|
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
T |
42238601 |
agtcgatttctatctgtgagcactcaaacatgtcaaaatgaattatacaatactacaatatctgtaaactgcatattgtatctaagtcattatttcatat |
42238700 |
T |
|
Q |
531 |
caggttatatttctgcctttacattaatttctttctttctgtgagtccttaattatataaccgaaaacaaaaccttaaaatctaccacattaagacagga |
630 |
Q |
|
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
42238701 |
caggttatatttctgcctttacattaatttctttca----gtgagtccttaattatataaccgaaaacaaaaccttaaaatctaccacattaagacagga |
42238796 |
T |
|
Q |
631 |
tgaaagctaggaaaccaaaggttgaaac |
658 |
Q |
|
|
|||||||||||||||||||||||||||| |
|
|
T |
42238797 |
tgaaagctaggaaaccaaaggttgaaac |
42238824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 42238193 - 42238342
Alignment:
Q |
1 |
acaaatgttgattgattttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacactatgttgaacaataa |
100 |
Q |
|
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
42238193 |
acaaatgttgattgaatttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacactatgttgaacaataa |
42238292 |
T |
|
Q |
101 |
acttaagattaaaaatctacaagattaaaaatcaattgtagacataaaag |
150 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
T |
42238293 |
acttaagattaaaaatctacaagattaaaaatcaattgcagacataaaag |
42238342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4280 times since January 2019
Visitors: 8757