View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_high_12 (Length: 272)
Name: NF4409_high_12
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 1751418 - 1751664
Alignment:
| Q |
20 |
gagttccatcctaaatcaaaacatacatacaatgattttttggtggaaatttgaacttcttaatattaggaggttatgaataaaattgagggagtgatac |
119 |
Q |
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| T |
1751418 |
gagttccatcctaaatcaaaacatacatacaatgattttttggtggaaatttgaacttcttaatattaggaggttataaataaaattgagggagtgatac |
1751517 |
T |
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| Q |
120 |
caagagatctttgttgacaattccttcaaagagagaaggtttcatccacccctcagccaaaagccagtttcctagattcactgctttgtatggcggattt |
219 |
Q |
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| T |
1751518 |
caagagatctttgttgacaattccttcaaagagagaaggtttcatccacccctcagccaaaagccagtttcctagattcactgctttgtatggcggattt |
1751617 |
T |
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| Q |
220 |
cccatttttgaaatggcttgtaaccaaagattgtgtgtttgtctgtg |
266 |
Q |
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| T |
1751618 |
cccatttttgaaatggcttgtaaccaaagattgtgtgtttgtctgtg |
1751664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 1759556 - 1759658
Alignment:
| Q |
117 |
taccaagagatctttgttgacaattccttcaaagagagaaggtttcatccacccctcagccaaaagccagtttcctagattcactgctttgtatggcgga |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |
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| T |
1759556 |
taccaatagatctttgttgacaattccttcaaagagagaaggtttcatccacccctcagccaagagccagtttcctagattcacagctttgtatggtgga |
1759655 |
T |
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| Q |
217 |
ttt |
219 |
Q |
| |
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||| |
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| T |
1759656 |
ttt |
1759658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 1722099 - 1722199
Alignment:
| Q |
109 |
gggagtgataccaagagatctttgttgacaattccttcaaagagagaaggtttcatccacccctcagccaaaagccagtttcctagattcactgctttgt |
208 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||| |||| |||| |||||| || ||||| | |||||||||||| |||||||| ||||||| |
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| T |
1722099 |
gggaatgataccaagagatctttgttgacaattccgtcaaagcgagatggttccatccatccttcagcaacaagccagtttccaagattcacagctttgt |
1722198 |
T |
|
| Q |
209 |
a |
209 |
Q |
| |
|
| |
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| T |
1722199 |
a |
1722199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 1744215 - 1744308
Alignment:
| Q |
116 |
ataccaagagatctttgttgacaattccttcaaagagagaaggtttcatccacccctcagccaaaagccagtttcctagattcactgctttgta |
209 |
Q |
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|||||||||||||||||||||||||||| |||||| |||| |||| |||||| || ||||| | |||||||||||||| |||||| |||||||| |
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| T |
1744215 |
ataccaagagatctttgttgacaattccgtcaaagcgagatggttccatccatccttcagcaacaagccagtttcctaaattcacagctttgta |
1744308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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