View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_high_2 (Length: 508)
Name: NF4409_high_2
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 36544680 - 36544229
Alignment:
| Q |
12 |
gttcactgatgagttttgtttatcaaatagnnnnnnntgttgaaataatagagtaatttatttttggtgagccgtttatttttt-cattttgtgaacaac |
110 |
Q |
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| T |
36544680 |
gttcaccgatgagttttgtttatcaaatagaaaaaa-tattgaaaaaatagagtaatttatttttggtgagccgtttatttttttcattttgtgaacaac |
36544582 |
T |
|
| Q |
111 |
attgcaagtttggaactaaaaagaaattaaataaaagcaatcagtcattttaaatactgaaaaatgatattgaagcgtatatgattgtgaaataaaattt |
210 |
Q |
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||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36544581 |
attgcaagtttggaactaaaa-gaaactatataaaagcaatcagtcattttaaatactgaaaaatgatattgaagcgtatatgattgtgaaataaaattt |
36544483 |
T |
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| Q |
211 |
tgaactggatgtgatggtgagccatttatttttgtgaacaatatcattttgtttatcaaatagatgtaggattattaatttgtgtttcatgtgattgtat |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36544482 |
tgaactggatgtgatggtgagccatttaattttgtgaacaatatcattttgtttatcaaatagatgtaggattattaatttgtgtttcctgtgattgtat |
36544383 |
T |
|
| Q |
311 |
ttgtgagtatagtttagagcaacataagcacttgtcattagattagagtgtcacacgtacaagaattttaataattatatgttttacatgatgtatttag |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
36544382 |
ttgtgagtatagtttagagcaacataagcacttgtcattagattagagtgtcacacgtacaagaattttaataataatatgttttacatgatatatttag |
36544283 |
T |
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| Q |
411 |
ataagggtagaaatagaagnnnnnnntattgtaactcattttattccatttattt |
465 |
Q |
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| T |
36544282 |
ataagggtagaaatggaa-aaaaaaatattgtaactcattttattccatttattt |
36544229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 36544200 - 36544164
Alignment:
| Q |
461 |
tatttcattataaaatcctcaaacaatataatggaat |
497 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
36544200 |
tattacattataaaatactcaaacaatataatggaat |
36544164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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