View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_high_9 (Length: 333)
Name: NF4409_high_9
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 508403 - 508559
Alignment:
| Q |
145 |
ggcacacccctcctaaataatttgataatttcagattcacacgagacaattaagttgcaaagaaaatagttgtattt-aatgataaattaatgtatgtgt |
243 |
Q |
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| T |
508403 |
ggcacacccctcctaaataatttgataatttcagattcacacgagacaattaacttgcaaagaaaatagttgtatttaaatgata----aatgtatgtgt |
508498 |
T |
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| Q |
244 |
gctggctagcaatatatgcaatgtacgtatatatctaggactaagaaaattgcgtctatct |
304 |
Q |
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| T |
508499 |
gctggctagcaatatatgcaatgtacgtatatatctaggactaagaaaattgcgtctatct |
508559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 508231 - 508282
Alignment:
| Q |
46 |
catctttgatgaaaacgttttagaccttggagacaaaggtagattacatgtc |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508231 |
catctttgatgaaaacgttttagaccttggagacaaaggtagattacatgtc |
508282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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