View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_1 (Length: 674)
Name: NF4409_low_1
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 232 - 658
Target Start/End: Original strand, 42238401 - 42238824
Alignment:
| Q |
232 |
aaatcattttcttcggatgaatgaaagtttatatgagttggacttcaaatactaccaaagacggattttaaagttcatagatagagcgttaatatagtat |
331 |
Q |
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| T |
42238401 |
aaatcattttcttcggatgaatgaaagtttatatgagttgaacttcaaatactatcaaagacggattttaaagctcatagatagagcgttaacatggtat |
42238500 |
T |
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| Q |
332 |
ttaccaattaaccaccaaaaagagcactacgctcaccgcagaaattgaactttcatttgcataggctataagtcaacttcttatcaactggataagacaa |
431 |
Q |
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| T |
42238501 |
ttaccgattaaccaccaaaaagagcactacgctaactgcagaaattgaactttcgcttgcataggctataagtcaacttcttaccaaccgaataagacaa |
42238600 |
T |
|
| Q |
432 |
attcgatttctatatgtgagcactcaaacatgtcaaaatgaattatacactactacaatatctgtaaactgcatattgtatctaagtcattatttca-at |
530 |
Q |
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| T |
42238601 |
agtcgatttctatctgtgagcactcaaacatgtcaaaatgaattatacaatactacaatatctgtaaactgcatattgtatctaagtcattatttcatat |
42238700 |
T |
|
| Q |
531 |
caggttatatttctgcctttacattaatttctttctttctgtgagtccttaattatataaccgaaaacaaaaccttaaaatctaccacattaagacagga |
630 |
Q |
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| T |
42238701 |
caggttatatttctgcctttacattaatttctttca----gtgagtccttaattatataaccgaaaacaaaaccttaaaatctaccacattaagacagga |
42238796 |
T |
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| Q |
631 |
tgaaagctaggaaaccaaaggttgaaac |
658 |
Q |
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| T |
42238797 |
tgaaagctaggaaaccaaaggttgaaac |
42238824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 42238193 - 42238342
Alignment:
| Q |
1 |
acaaatgttgattgattttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacactatgttgaacaataa |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42238193 |
acaaatgttgattgaatttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacactatgttgaacaataa |
42238292 |
T |
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| Q |
101 |
acttaagattaaaaatctacaagattaaaaatcaattgtagacataaaag |
150 |
Q |
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| T |
42238293 |
acttaagattaaaaatctacaagattaaaaatcaattgcagacataaaag |
42238342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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