View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_11 (Length: 321)
Name: NF4409_low_11
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 92 - 262
Target Start/End: Original strand, 32017430 - 32017600
Alignment:
| Q |
92 |
gttagggtgttccgcctatatacaacacctgatttatttttgtattgttgtttttgctggcctttacacttcttgtgcaggtttggcgtaataaaatttt |
191 |
Q |
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| T |
32017430 |
gttagggtgttccgcctatatacaacacctgatttatttttgtattgttgtttttgctggcctttacacttcttgtgcaggtttggcgtgataaaatttt |
32017529 |
T |
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| Q |
192 |
ccgtataaaaacaatgttaataacaaactattattttatcttttctacttaatatcttaagcttttccttt |
262 |
Q |
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| T |
32017530 |
ccgtttaaaaacaatgttaataacaaactattattttatcttttctacttaatatcttaagcttttccttt |
32017600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32017339 - 32017402
Alignment:
| Q |
1 |
aagggaggtctttgctgtttgtgaggcctgttaatgctttctggtctgctgtttgcgcctcccc |
64 |
Q |
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| T |
32017339 |
aagggaggtctttgctgtttgtgaggcctttttatgctttctggtctgctgtttgcacctcccc |
32017402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 5179668 - 5179728
Alignment:
| Q |
96 |
gggtgttccgcctatatacaacacctgatttatttttgtattgttgtttttgctggccttt |
156 |
Q |
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| T |
5179668 |
gggtgttccgcctatatacggcaccctgtttgattttgtactgttgtttttgctggccttt |
5179728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37604772 - 37604709
Alignment:
| Q |
1 |
aagggaggtctttgctgtttgtgaggcctgttaatgctttctggtctgctgtttgcgcctcccc |
64 |
Q |
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| T |
37604772 |
aagggaggtctgtgctgtttgtgaggcctgtttgtgatttctggtctgctgtttgcgcctcccc |
37604709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 23352988 - 23353066
Alignment:
| Q |
96 |
gggtgttccgcctatatacaacacctgattta-tttttgtattgttgtttttgctggcctttacacttcttgtgcaggt |
173 |
Q |
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| T |
23352988 |
gggtgttccgcctatatacggcacccgattttgtttttctattgttgtttttgatggcctttgcgcttcttgtgcaggt |
23353066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 25542676 - 25542731
Alignment:
| Q |
3 |
gggaggtctttgctgtttgtgaggcctgttaatgctttctggtctgctgtttgcgc |
58 |
Q |
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| T |
25542676 |
gggaagtcttttctgtttgtgaggcctgtttgtgttttctggtctgctgtttgcgc |
25542731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 3595141 - 3595183
Alignment:
| Q |
128 |
tttttgtattgttgtttttgctggcctttacacttcttgtgca |
170 |
Q |
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| T |
3595141 |
tttttatattgttgtttttgctggcctttgcgcttcttgtgca |
3595183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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