View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_12 (Length: 291)
Name: NF4409_low_12
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 7626800 - 7626529
Alignment:
| Q |
1 |
accaaatatcacactaatattgatgtattaacatcagcaatgattnnnnnnnntgaaaataattgaatataattatatcctaccgttatgattatatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
7626800 |
accaaatatcacactaatattgatgtattaacatcaacaatgattaaaaaaa-tgaaaataattgaatataattatatcctatcgttatgatcatatgat |
7626702 |
T |
|
| Q |
101 |
tcgtgcaatcaatataacgcgtgttggatacaagacacacttttaatcgtggtaggattgaagcaagaatcagccaagattaggatttgttttgattgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
7626701 |
tcgtgcaatcaatataacgcgtgttggatacctgacacactttcaatcgtggtaggattgaagcaaaaatcagccaagattaggatttgttttgattgaa |
7626602 |
T |
|
| Q |
201 |
gagaacgtacgtacggttagtgttgtcctaataaagtcctagacctaccttacacaaacgtgcgtctatgtag |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7626601 |
gagaacgtacgtacggttagtgttgtcctaataaagtcctagacctaccttacacaaacgtgcgtctatgtag |
7626529 |
T |
|
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