View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_13 (Length: 289)
Name: NF4409_low_13
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_13 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 40821599 - 40821849
Alignment:
| Q |
25 |
gcaaaacaaaatgaacagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctt |
124 |
Q |
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| T |
40821599 |
gcaaaacaaaatgaacagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctt |
40821698 |
T |
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| Q |
125 |
tcttattaatgatgatttgagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacg |
224 |
Q |
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| T |
40821699 |
tcttattaataatgatttgagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatg |
40821798 |
T |
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| Q |
225 |
ttgtttgagtcatttcactacttatttaggttatcacttttcttttctttt |
275 |
Q |
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| T |
40821799 |
ttgtttgagtcatttcactacttatttaggttatcacttttcttttctttt |
40821849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 20292236 - 20292021
Alignment:
| Q |
18 |
acaaatagcaaaacaaaatgaacagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaac |
117 |
Q |
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| T |
20292236 |
acaaatagcaaaacaaaatgaacagaacagagagcatatttgaac------tgaaac--ccattatatgatcaacaagtagactatgatacaaaaa-aac |
20292146 |
T |
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| Q |
118 |
cactctttcttattaatgatgatttgagatttc---cttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaa |
214 |
Q |
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||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |||| ||| |||| || |
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| T |
20292145 |
cactctttcttattaataatgatttgagatttccttcttaacgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaa----tattatttcaa |
20292050 |
T |
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| Q |
215 |
aaacttaacgttgtttgagtcatttcact |
243 |
Q |
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| T |
20292049 |
aaaattaatgttctttgagacatttcact |
20292021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
| Q |
56 |
tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt |
131 |
Q |
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|||||||||| ||||||||| ||||| ||||||| | | | | ||||||||| ||||||||||||||||||||| |
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| T |
20092587 |
tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt |
20092660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 135558 - 135603
Alignment:
| Q |
20 |
aaatagcaaaacaaaatgaacagaacagagagcatatttgaacaac |
65 |
Q |
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| T |
135558 |
aaatagcaaaacaaaattaacaaaacagagaacacatttgaacaac |
135603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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