View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_14 (Length: 282)
Name: NF4409_low_14
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 26938631 - 26938479
Alignment:
| Q |
22 |
gtggtgttcatgataatcataaatagaacatggttagcagttagcacaaaagacttaaagaaccttataaacatgagctgaactatggttccatacagac |
121 |
Q |
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| T |
26938631 |
gtggtgttcatgataatgataaatagaacgtggttagcag-------aaaagacttaaagaacctaataaatatgagctgaactatggttccataccgac |
26938539 |
T |
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| Q |
122 |
aaaagaaaatctcacatcagacaaacacaagtaaaagtatatacaagcatatggttttgc |
181 |
Q |
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| T |
26938538 |
aaaagaaaatctctcatcggacaaagacaagtaaaagtgtatacaaacatatggttttgc |
26938479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 26938465 - 26938422
Alignment:
| Q |
226 |
cgagcatatggttatgatacatgagcaactcaacatagaattat |
269 |
Q |
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| T |
26938465 |
cgagcatatggttatgatacatgagcaactcaacataaaattat |
26938422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 14692475 - 14692359
Alignment:
| Q |
61 |
gttagcacaaaagacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaacacaagtaaaagta |
160 |
Q |
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| T |
14692475 |
gttagcacaaaagacttaaa----ctaataaacatgagctgaactatggttccatacagacaaaagaaaatttcacatcagacaaagacaagtaaaagtg |
14692380 |
T |
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| Q |
161 |
tatacaagcatatggttttgc |
181 |
Q |
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| T |
14692379 |
tatacaagcatatggttttgc |
14692359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 14685229 - 14685117
Alignment:
| Q |
72 |
agacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaac----acaagtaaaagtatatacaa |
167 |
Q |
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| T |
14685229 |
agacttaaagaacgttataa-catgagctcagttatggttctatgcagacaaaagaaaatctcacatcaaacaaacaaagacatgtaaaagtgtatataa |
14685131 |
T |
|
| Q |
168 |
gcatatggttttgc |
181 |
Q |
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|||||||||||||| |
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| T |
14685130 |
gcatatggttttgc |
14685117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 14692313 - 14692271
Alignment:
| Q |
227 |
gagcatatggttatgatacatgagcaactcaacatagaattat |
269 |
Q |
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| T |
14692313 |
gagcatatgattatgatacatgatcaactcaacatagaattat |
14692271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 19814922 - 19815042
Alignment:
| Q |
61 |
gttagcacaaaagacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaacacaagtaaaagta |
160 |
Q |
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||||||| || ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||| ||| ||| |||||||||||| |
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| T |
19814922 |
gttagcagaatagacttaaagaacctaataaacatgagctgaactatggttccattccgacaaaagaaaatctctcattagataaagacaagtaaaagtg |
19815021 |
T |
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| Q |
161 |
tatacaagcatatggttttgc |
181 |
Q |
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||||||| ||||||||||||| |
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| T |
19815022 |
tatacaaacatatggttttgc |
19815042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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