View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4409_low_18 (Length: 224)
Name: NF4409_low_18
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 31382501 - 31382428
Alignment:
| Q |
119 |
tgcaagtcactggaatcacaattacaaataagctaaaggaaacaa-atacatatatcaaatgcttccatcaaat |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
31382501 |
tgcaagtcactggaatcacaattacaaataggcgaaaggaaataatatacatatatcaaatgcttctatcaaat |
31382428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 31406355 - 31406296
Alignment:
| Q |
119 |
tgcaagtcactggaatcacaattacaaataagctaaaggaaacaaatacatatatcaaatg |
179 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||| |
|
|
| T |
31406355 |
tgcaagtcactggaatcacaattacagataagctaaatg-aagtaatacatatatcaaatg |
31406296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3240 times since January 2019
Visitors: 8679