View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_4 (Length: 458)
Name: NF4409_low_4
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 127 - 322
Target Start/End: Original strand, 31527079 - 31527274
Alignment:
| Q |
127 |
taagtaaaatatccatcaaatgaatctcaaagccaaggtttgatcaactaaaaacaataacatggatataatacttgcgatgtatcgattgatgtctaaa |
226 |
Q |
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| T |
31527079 |
taagtaaaatattcatcaaataaatctcaaagccaaggtttgatcaactaaaaacaataacatggatataatacttgcaatatatcgattgatgtctaaa |
31527178 |
T |
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| Q |
227 |
atattttttaaaagcaataagattgaattggatactttgaaactccctaaccaaaagaaaaagaaagagttggaattatgcaaagtttattattaa |
322 |
Q |
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| T |
31527179 |
atattttttaaaagcaataagattgaattggatactttgaaactccctaaccaaaagaaaaagaaagagttggaattatgcaaagtttattattaa |
31527274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 31523524 - 31523692
Alignment:
| Q |
1 |
gggttatcataaatcccatggtacaaaatgtaccaccac-aacgcatcaattgataaggtccgagtttgtcaagtattatataaacaaaatttagaaata |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
31523524 |
gggttatcataaatcccatggtacaaaatgtaccaccactaaagcatcaattgataaggtctgagttagtcaagtattatataaacaaaatttagaaata |
31523623 |
T |
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| Q |
100 |
tacagctcaaaaagaaagactacactctaagtaaaatatccatcaaatgaatctcaaagccaaggtttg |
168 |
Q |
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| T |
31523624 |
tacagctcaaaaagaaagattacactctaagtaaaatatacttcaaatgaatatcaaagccaaggtttg |
31523692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 31526122 - 31526251
Alignment:
| Q |
1 |
gggttatcataaatcccatggtacaaaatgtaccaccacaacgcatcaattgataaggtccgagtttgtcaagtattatataaacaaaatttagaaatat |
100 |
Q |
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| T |
31526122 |
gggttatcataaatcccatggtacaaaatgtaccaccacaacgcatcaactgataaggtccgagtttgtcaagtattatataaacaaaatttagaaatat |
31526221 |
T |
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| Q |
101 |
acagctcaaaaagaaagactacactctaag |
130 |
Q |
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|| || |||||||||||||||||||||||| |
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| T |
31526222 |
acggcgcaaaaagaaagactacactctaag |
31526251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 380
Target Start/End: Original strand, 31527273 - 31527312
Alignment:
| Q |
341 |
aagataaggggaaaactactcactcattataaagatgagc |
380 |
Q |
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| T |
31527273 |
aagataaggggaaaactactcactcattataaagatgagc |
31527312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 23659636 - 23659574
Alignment:
| Q |
224 |
aaaatattttttaaaagcaataagattgaattggatactttgaaactccctaaccaaaagaaa |
286 |
Q |
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||||||||| ||||| |||||| |||||||| |||||||||||||||| ||| |||||||| |
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| T |
23659636 |
aaaatatttcttaaacacaataaaattgaattagatactttgaaactccacaacaaaaagaaa |
23659574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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