View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_5 (Length: 446)
Name: NF4409_low_5
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 36923921 - 36923499
Alignment:
| Q |
17 |
taattaaccatataactcaaaa-tgtactaccttgtcttgactaaccaaatttcaatctaaggcagtgtacattggtcaatgcaaatttgaagtatacta |
115 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36923921 |
taattaagcatataactcaaaaatgtactaccttgtcttgactaaccaaatttcaatctaaggcagtgtacattggtcaatgcaaatttgaagtatacta |
36923822 |
T |
|
| Q |
116 |
tcatgcaaattattagtgtgattctagaaagccagacattaggttccgctaacgtctcaattataaaatattcnnnnnnntaaagacataaatgaagaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36923821 |
tcatgcaaattattagtgtgattctagaaagccagacattaggttccgctaacgtctcaattataaaatattcaaaaaaataaagacataaatgaagaac |
36923722 |
T |
|
| Q |
216 |
aaaacaacaaatatagaagcctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggac |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36923721 |
aaaacaacaaaaatagaagcctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggac |
36923622 |
T |
|
| Q |
316 |
gagaatgttcaagacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccacttttcaagcttgccttttccatcacctct |
415 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36923621 |
gagaatgttcaagacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccacttttcaagctggccttttccatcacctct |
36923522 |
T |
|
| Q |
416 |
taaagtctctagctcttcttctc |
438 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
36923521 |
taaagtctctagctcttcttctc |
36923499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 47129164 - 47129223
Alignment:
| Q |
328 |
gacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccact |
387 |
Q |
| |
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|||| ||||| ||| ||||||| ||||||||||||||||| ||||| || |||||||||| |
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|
| T |
47129164 |
gaccattatctggagttcccaagtcattgtagcatgcatagtcatacactctatcccact |
47129223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 385
Target Start/End: Original strand, 46711718 - 46711840
Alignment:
| Q |
263 |
agttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagacctttatcaggatttcccaaatcattgtagcat |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| || || ||||||||||||||| |||||||||| ||| || |
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|
| T |
46711718 |
agttcttcccctgcgagggtaaggatattcactggaccctccaagaactggacgaacatatttcggacctttatcaggatccgccaaatcattatagtat |
46711817 |
T |
|
| Q |
363 |
gcataatcataaaccctatccca |
385 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
46711818 |
gcataatcataaaccctgtccca |
46711840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 358
Target Start/End: Complemental strand, 36744130 - 36744008
Alignment:
| Q |
236 |
ctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagaccttta |
335 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||||||| ||||| || ||| ||| || ||| ||||| ||||| ||||||| | | || ||| ||| |
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|
| T |
36744130 |
ctaacctgttttggtcggttttctgcaggttcttcccctacgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactctta |
36744031 |
T |
|
| Q |
336 |
tcaggatttcccaaatcattgta |
358 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
36744030 |
tctggatttcccaaatcattgta |
36744008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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