View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_6 (Length: 422)
Name: NF4409_low_6
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 54629 - 55045
Alignment:
| Q |
1 |
attgagggtcctattgagcaaccatatcttcttttgatgccaagatttgaggacctcagctgctgttgatgttttcttttactgttctgaaatggaattt |
100 |
Q |
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| T |
54629 |
attgagggtcctattgagcaaccatatcttcttttgatgccaagatttgaggacctcagctgctgttgatgttttcttttactgttctgaaatggaattt |
54728 |
T |
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| Q |
101 |
aactttctacattcagaatgtacaatacatactgtgaaaaatcttaactaaggaacatg-------------nnnnnnnnnggaaggcaattccaataaa |
187 |
Q |
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| T |
54729 |
aactttctacattcagaatgtacaatacatactgtgaaaaatcttaactaaggaacatgaagaaaaaaaaaaaaaaaaaaaggaaggcaattccaataaa |
54828 |
T |
|
| Q |
188 |
tccaacaattttcaataacagctattatgatacgtagagcaagcaagatataaacaatgttnnnnnnnnnnnnggaaaccacaaacccaagttacttgct |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54829 |
tccaacaattttcaataacagctattatgatacgtagagcaagcaagatataaacaatgttaaaaaacaaaaaggaaaccacaaacccaagttacttgct |
54928 |
T |
|
| Q |
288 |
aacttgatgacctaaggaccaaagtgatgctatcacgaatgaactatggacatacatatgcctggatcatactttttaattgtgaactgcatcatatgtg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54929 |
aacttgatgacctaaggaccaaagtgatgctatcacgaatgaactatggacatacatatgcctggatcatactttttaattgtgaactgcatcatatgtg |
55028 |
T |
|
| Q |
388 |
caaccacattgcctaat |
404 |
Q |
| |
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| T |
55029 |
caaccacattgcctaat |
55045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 33754378 - 33754468
Alignment:
| Q |
291 |
ttgatgacctaaggaccaaagtgatgctatcacgaatgaactatggacatacatatgcctggatcatactttttaattgtgaactgcatca |
381 |
Q |
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|||||||||||| | |||| | ||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33754378 |
ttgatgacctaacaatcaaaatcatgctatcaggtatgaactatgaacatacatatgcctgaatcatactttttaattgtgaactgcatca |
33754468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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