View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4409_low_7 (Length: 372)
Name: NF4409_low_7
Description: NF4409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4409_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 36503108 - 36503466
Alignment:
| Q |
1 |
tcatcacaataggctgtattttagttttgcttgcttcttagtttttatctatttataaaaatgatgcactttttgaaagcaaatgttacttgaaaacaag |
100 |
Q |
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| T |
36503108 |
tcatcacaataggctatattttagttttgattgcttcttagtttttatctatttataaaaatgatgcactttttgaaagcaaatgttacttgaaaacaag |
36503207 |
T |
|
| Q |
101 |
agagtttgtatgctggaagtataaataaaatattaaaaattactcaaaaactttagttctaaactgttaaagtaattgattcaaactttttgatagatcc |
200 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36503208 |
agagtttgtaagctggaagtataaataaaataaaaaaaattactcaaaaactttagttctaaactgttaaagtaattgattcaaactttttgatagatcc |
36503307 |
T |
|
| Q |
201 |
tatttcccaagggattttataagaagaggaggtttatcaacatacagttgttaaatttttgtatacatgcaacacaactcacagacacacgcgcacacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
36503308 |
tatttcccaagggattttataagaagaggaggtttatcaacatacagttgttaaatttttgtatgcatgcaacacaactcacagacacatgcgcacacta |
36503407 |
T |
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| Q |
301 |
tgcacctgttgtatgtttgaaatgcaaactatttttggccaaataatatcttgctgatg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36503408 |
tgcacctgttgtatgtttgaaatgcaaactatttttggccaaataatatcttgctgatg |
36503466 |
T |
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