View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410-Insertion-3 (Length: 573)
Name: NF4410-Insertion-3
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 573
Target Start/End: Original strand, 7939823 - 7940387
Alignment:
| Q |
8 |
tgttcctcccggtacaaaacctaaaacttgtaagcgatgtaaagggtcaggaaaggtcagtatcatgctggaattgatttaattcctgttacatgcttga |
107 |
Q |
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| T |
7939823 |
tgttcctcccggtacaaaacctgaaacttgtaagcgatgtaaagggtcaggaaaggtcagtatcatgctggaattgatttaattcctgttacatgcttga |
7939922 |
T |
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| Q |
108 |
gaagtgttgttcaattgataattttcaagatttccaggtaattatacaaactgtgataggcggagtgaagattccttgtattaactgcaagggaaccgga |
207 |
Q |
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| T |
7939923 |
gaagtgttgttcaattgataattttcgagaattccaggtaattatacaaactgtgataggcggagtgaagattccttgtattaactgcaagggaaccgga |
7940022 |
T |
|
| Q |
208 |
gtaattgcatcggtatggtacaaactgtcttctgcactttgcaatatcgattctcttctatttaatatgttagttacaagggttcagaacttcaaatgtg |
307 |
Q |
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| T |
7940023 |
gtaattgcaacggtatggtacaaactgtcttctgcactttgcaatatcgattctcttctatttaatatgttagttataagggttcagaacttcaaatatg |
7940122 |
T |
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| Q |
308 |
ataaacgaaacgaacttcctgtgtctatgtaacctgcttattgcagtctgccgttattagtttggtctacccttaatttttctaaataaaatcatatacc |
407 |
Q |
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| T |
7940123 |
ataaacgaaacgaacttcctgtgtctatgtaacctgcttattgcagtctgccgttattagtttggtct-cccttaatttttctaaataaaatcatgtatc |
7940221 |
T |
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| Q |
408 |
aggcaataaatgacactatagtcattacctgtatttctatggacatggtgttctttcatactaatattaaattttgggaatatgttgttgatttttaatc |
507 |
Q |
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| T |
7940222 |
aggcaataaatgacactatagtcattacctgtatttctatgtacatggtggtctttcataataatatgaaattgtgggaatatattgttggtttttaatc |
7940321 |
T |
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| Q |
508 |
ttttgtaattggtatcaggatttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaag |
573 |
Q |
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| T |
7940322 |
ttttgtaattggtatcaggatttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaag |
7940387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 7927206 - 7927464
Alignment:
| Q |
10 |
ttcctcccggtacaaaacctaaaacttgtaagcgatgtaaagggtcaggaaaggtcagtatcatgctggaattgatttaattcctgttacatgcttgaga |
109 |
Q |
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||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||| || ||||||| ||||||||| ||||||| || ||||| |
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| T |
7927206 |
ttcctcctggtacaaaacctgaaacttgtaagcgatgcaaagggtcaggagtggtcagtatcgtgttggaattaatttaattcttgttacaagcctgaga |
7927305 |
T |
|
| Q |
110 |
agtgttgttcaattgataattttcaagatttccaggtaattatacaaactgtgataggcggagtgaagattccttgtattaactgcaagggaaccggagt |
209 |
Q |
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||||||||||||||||||||||| |||| ||||| | || ||||||||| ||| | || || | | | ||||| || ||||||||||| ||| |
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| T |
7927306 |
agtgttgttcaattgataatttttgagatgtccagatgtttgtacaaactggaatattcagaatggaaagtacttgtgctacatgcaagggaactggaaa |
7927405 |
T |
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| Q |
210 |
aattgcatcggtatggtacaaactgtcttctgcactttgcaatatcgattctcttctat |
268 |
Q |
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||||| |||||||||||||||| ||||||||| ||| ||| |||| ||||||||||||| |
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| T |
7927406 |
aattgtatcggtatggtacaaattgtcttctgtactatgccatattgattctcttctat |
7927464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 8640299 - 8640360
Alignment:
| Q |
9 |
gttcctcccggtacaaaacctaaaacttgtaagcgatgtaaagggtcaggaaaggtcagtat |
70 |
Q |
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| T |
8640299 |
gttcctcctggtacaagacctgaaacctgcaagcgttgtaaagggtcaggagtggtcagtat |
8640360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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