View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4410_high_11 (Length: 324)

Name: NF4410_high_11
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4410_high_11
NF4410_high_11
[»] chr2 (2 HSPs)
chr2 (1-258)||(4420025-4420282)
chr2 (82-183)||(4417909-4418010)
[»] chr1 (11 HSPs)
chr1 (119-255)||(30629519-30629655)
chr1 (119-250)||(30623888-30624019)
chr1 (208-258)||(40444682-40444732)
chr1 (130-240)||(30641730-30641840)
chr1 (122-180)||(30689730-30689788)
chr1 (122-184)||(30698616-30698678)
chr1 (122-180)||(30718773-30718831)
chr1 (212-255)||(18652894-18652937)
chr1 (122-180)||(30671835-30671893)
chr1 (122-180)||(30710499-30710557)
chr1 (119-192)||(18709026-18709099)
[»] chr3 (1 HSPs)
chr3 (120-177)||(33469977-33470034)
[»] chr7 (4 HSPs)
chr7 (199-255)||(38809648-38809704)
chr7 (130-255)||(38822597-38822722)
chr7 (131-173)||(38830756-38830798)
chr7 (119-253)||(38862397-38862531)
[»] chr5 (1 HSPs)
chr5 (120-179)||(25986001-25986060)
[»] chr4 (2 HSPs)
chr4 (113-177)||(34648874-34648938)
chr4 (121-178)||(49385786-49385843)
[»] chr6 (1 HSPs)
chr6 (120-184)||(4038752-4038816)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4420025 - 4420282
Alignment:
Q  1 caataaactttctctctttgtaacatcaataattcctttcttaccatatcctaaagcatttgtatttgcaacactctcaattgggaaattaagacatgct 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4420025 caataaactttctctctttgtaacatcaacaattcctttcttaccatatcctaaagtatttgtatttgcaacactctcaattgggaaattaagacatgct 4420124  T
Q  101 tttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4420125 tttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgatg 4420224  T
Q  201 aatctctaatttcagctgcatattttccccatggccttctccttactcctctataatg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420225 aatctctaatttcagctgcatattttccccatggccttctccttactcctctataatg 4420282  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 4418010 - 4417909
Alignment:
Q  82 tgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaact 181  Q
    ||||||||||||  | || ||||||||||| ||| | ||||||||| |||||||||| | |||||||| ||||||||| |  ||||| |||||||| |||    
T  4418010 tgggaaattaagcaaagcctttgaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatact 4417911  T
Q  182 ct 183  Q
    ||    
T  4417910 ct 4417909  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 30629519 - 30629655
Alignment:
Q  119 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 218  Q
    ||||| |||| ||||||||||||||| |||  ||||||||||||||||||||||| |||||||||   ||| ||  | |  || ||||| ||||| ||||    
T  30629519 aaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctg 30629618  T
Q  219 catattttccccatggccttctccttactcctctata 255  Q
    |  ||||||||||||| |||||||| |||||||||||    
T  30629619 cgaattttccccatggtcttctcctaactcctctata 30629655  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 30623888 - 30624019
Alignment:
Q  119 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 218  Q
    ||||| |||| ||||||||||||||||||   ||||||||||||||||||||||| |||||||||   ||||||  |||  || ||||| ||||| ||||    
T  30623888 aaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctg 30623987  T
Q  219 catattttccccatggccttctccttactcct 250  Q
    |  ||||||||||||| ||||| || ||||||    
T  30623988 cgaattttccccatggtcttcttctaactcct 30624019  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 40444682 - 40444732
Alignment:
Q  208 aatttcagctgcatattttccccatggccttctccttactcctctataatg 258  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  40444682 aatttctgcagcatattttccccatggccttctccttactcctctgtaatg 40444732  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 30641840 - 30641730
Alignment:
Q  130 atcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccc 229  Q
    ||||||||||   |||||||||||||| ||||||||||| |||||||| | |||||  |||||| |||  |  || | |||||| |||||| ||||||||    
T  30641840 atcataagctcttgcagcttgttcagcagtatcaaatgttccaagccatattcttgtccctttccttgttgggtcacgaatttctgctgcaaattttccc 30641741  T
Q  230 catggccttct 240  Q
    ||||| |||||    
T  30641740 catggtcttct 30641730  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 30689730 - 30689788
Alignment:
Q  122 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 180  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  30689730 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 30689788  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 30698616 - 30698678
Alignment:
Q  122 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactctt 184  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||||||    
T  30698616 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactctt 30698678  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 30718773 - 30718831
Alignment:
Q  122 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 180  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  30718773 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 30718831  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 18652937 - 18652894
Alignment:
Q  212 tcagctgcatattttccccatggccttctccttactcctctata 255  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||    
T  18652937 tcagctgcaaatttcccccatggccttctccttacacctctata 18652894  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 30671835 - 30671893
Alignment:
Q  122 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 180  Q
    ||||||| |||||||||||||||||| | ||||||  | |||||||| |||||||||||    
T  30671835 gcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac 30671893  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 30710499 - 30710557
Alignment:
Q  122 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 180  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||    
T  30710499 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaac 30710557  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 18709026 - 18709099
Alignment:
Q  119 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaaccttt 192  Q
    |||||||||||||||||||||   ||||||| |   ||||||||||| || |||||||| |||||||| |||||    
T  18709026 aaagcagctttatcataagcttttgcagcttctatggctgtatcaaaggttccaagccatactcttgatccttt 18709099  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 33470034 - 33469977
Alignment:
Q  120 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagcca 177  Q
    ||||||||||||||||||| ||||| |||| ||||||||| ||||| |||||||||||    
T  33470034 aagcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagcca 33469977  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 38809704 - 38809648
Alignment:
Q  199 cgaatctctaatttcagctgcatattttccccatggccttctccttactcctctata 255  Q
    |||||||| ||| || |||||| ||||||||||||||||| ||||||||||||||||    
T  38809704 cgaatctcgaatctctgctgcacattttccccatggccttatccttactcctctata 38809648  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 38822722 - 38822597
Alignment:
Q  130 atcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccc 229  Q
    ||||||||||   |||||||  ||||| || | ||||||||||||||||||||  | ||| | | | | |||||||| ||| || || ||| ||||||||    
T  38822722 atcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccc 38822623  T
Q  230 catggccttctccttactcctctata 255  Q
    ||||||||| |||| |||||||||||    
T  38822622 catggccttatcctcactcctctata 38822597  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 38830798 - 38830756
Alignment:
Q  131 tcataagctaaagcagcttgttcagctgtatcaaatgtaccaa 173  Q
    ||||||||||||||||||  |||||||||||||||||| ||||    
T  38830798 tcataagctaaagcagctgcttcagctgtatcaaatgttccaa 38830756  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 38862531 - 38862397
Alignment:
Q  119 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 218  Q
    ||||| |||| |||||||||||||||||||  ||| || || || ||||| |||| ||| |||||   ||||||  |||  |||||||| || || || |    
T  38862531 aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgcgg 38862432  T
Q  219 catattttccccatggccttctccttactcctcta 253  Q
    || ||||||||||||||||  | ||||||||||||    
T  38862431 caaattttccccatggcctagttcttactcctcta 38862397  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 25986060 - 25986001
Alignment:
Q  120 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaa 179  Q
    |||||||| |||||||||| |||||||||| |||||| || ||||| |||||||||||||    
T  25986060 aagcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaaa 25986001  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 34648874 - 34648938
Alignment:
Q  113 attctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagcca 177  Q
    ||||| |||||||||||||||||||| |  ||||| | ||||||||| | |||||||||||||||    
T  34648874 attctgaaagcagctttatcataagcaattgcagcctcttcagctgtttgaaatgtaccaagcca 34648938  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 49385843 - 49385786
Alignment:
Q  121 agcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaa 178  Q
    ||||||| |||||||||| | |||||||| || ||| |||||||| ||||||||||||    
T  49385843 agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaa 49385786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 4038816 - 4038752
Alignment:
Q  120 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactctt 184  Q
    ||||||| | ||||||||||  |||||||| ||||||||||||||| || || | ||||||||||    
T  4038816 aagcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt 4038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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