View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4410_high_12 (Length: 315)

Name: NF4410_high_12
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4410_high_12
NF4410_high_12
[»] chr7 (5 HSPs)
chr7 (34-231)||(1774597-1774794)
chr7 (43-231)||(24977213-24977401)
chr7 (38-217)||(34144464-34144635)
chr7 (87-233)||(3270605-3270749)
chr7 (106-236)||(24976968-24977098)
[»] chr6 (2 HSPs)
chr6 (81-231)||(6889395-6889545)
chr6 (127-217)||(9664974-9665063)
[»] chr1 (4 HSPs)
chr1 (34-219)||(38010677-38010863)
chr1 (43-231)||(3222964-3223143)
chr1 (182-231)||(1796905-1796954)
chr1 (86-233)||(26542409-26542554)
[»] chr8 (4 HSPs)
chr8 (43-190)||(14101144-14101284)
chr8 (43-231)||(39643497-39643676)
chr8 (182-231)||(14099695-14099744)
chr8 (87-139)||(39643248-39643298)
[»] scaffold0161 (1 HSPs)
scaffold0161 (51-217)||(22709-22875)
[»] chr4 (3 HSPs)
chr4 (266-304)||(1923413-1923451)
chr4 (43-211)||(27065611-27065778)
chr4 (43-211)||(27086714-27086881)
[»] scaffold0408 (1 HSPs)
scaffold0408 (182-231)||(10037-10086)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 1774597 - 1774794
Alignment:
Q  34 tttgattcctttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||| ||||||||||||||||    
T  1774597 tttgattcctttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccctaacgggcctaaagactaaatacctaacttaaaggcc 1774696  T
Q  134 caactaataataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1774697 caactaataacaacttaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttcagtctaatatcactctctaaca 1774794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 24977213 - 24977401
Alignment:
Q  43 tttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaata 142  Q
    |||| ||||||| ||||| ||||||||||||| |  |||||||  || ||||| |||||  | |||||| |||||||||| || |||||||||||||  |    
T  24977213 tttgcatagtgtctcaaagacactatatatagaaaggataatgggtaataaccctaatgaacctaaagactaaagacctagctaaaaggcccaactagaa 24977312  T
Q  143 ataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    | |||||||| |||||||||||||| ||  || | ||  ||||||||||||||||||||||||||  | ||||||  ||||||||||||    
T  24977313 acaactcaaaagaaagacaaactaatataattttgctcttaaactaaatagctaaattattcattgaaatctaattgcactctctaaca 24977401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 217
Target Start/End: Complemental strand, 34144635 - 34144464
Alignment:
Q  38 attcctttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaac 137  Q
    ||||||||| || |||||||||| |||||||||||| || |||||       |||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  34144635 attcctttggatggtgtgtcaaagacactatatataagaatgata-------gtaaccctaatgggcctaaagactaaagacctaactt-aaggcccaac 34144544  T
Q  138 taataataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaat 217  Q
    ||  || |||||||  |||||| ||||||| ||  |  ||||  ||||||| ||| |||||||||||||||||| |||||    
T  34144543 tagcaacaactcaagtgaaagataaactaatataatcttactcttaaactagatatctaaattattcatttgagcctaat 34144464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 3270749 - 3270605
Alignment:
Q  87 atagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaataataactcaaaggaaagacaaactaacattcttatacttataaac 186  Q
    ||||||||| |||||||||||| || |||||||||||| ||| ||||||||||| ||||||||||  ||||||| |||||| ||  || || |  ||| |    
T  3270749 atagtaaccctaatgggcttaa-gactaaagacctaacataa-ggcccaactaacaataactcaagtgaaagaccaactaatataattttaatcttaagc 3270652  T
Q  187 taaatagctaaattattcatttgagtctaatatcactctctaacaat 233  Q
    |||||| |||||| ||| |||| |||||||| ||||| |||||||||    
T  3270651 taaatatctaaatcatttatttaagtctaatttcactatctaacaat 3270605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 24977098 - 24976968
Alignment:
Q  106 taaagattaaagacctaacttaaaggcccaactaataataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattca 205  Q
    |||||| |||| ||||| || |||||||||||||  || |||||||| |||||||||||||| ||  || | ||  ||||||||||| ||||||||||||    
T  24977098 taaagactaaaaacctagctaaaaggcccaactagaaacaactcaaaagaaagacaaactaatataattttgctcttaaactaaataactaaattattca 24976999  T
Q  206 tttgagtctaatatcactctctaacaataac 236  Q
    ||| | ||||||  |||||||||||| ||||    
T  24976998 tttaaatctaattgcactctctaacagtaac 24976968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 6889545 - 6889395
Alignment:
Q  81 taatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaataataactcaaaggaaagacaaactaacattcttatactt 180  Q
    ||||| ||||||||| |||||| | |||||| |||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||  || |||||    
T  6889545 taatggatagtaaccctaatggacctaaagactaaagacccaacttaaaggtccaactaacaacaactcaaaggaaagacaaactaacataattttactt 6889446  T
Q  181 ataaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    ||||||||||||||||||||||| ||||||||||| |  ||||||||||||    
T  6889445 ataaactaaatagctaaattatttatttgagtctagttgcactctctaaca 6889395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 9664974 - 9665063
Alignment:
Q  127 aaaggcccaactaataataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaat 217  Q
    ||||| |||||||| || || |||||| ||||||||||||| ||  || ||||| |||| ||||||||||||||||| |||| | ||||||    
T  9664974 aaaggtccaactaaaaacaaatcaaag-aaagacaaactaatataattttacttctaaattaaatagctaaattatttattttaatctaat 9665063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 38010677 - 38010863
Alignment:
Q  34 tttgattcctttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcc 133  Q
    |||||||  |||| ||||| ||||||| ||||||| ||||||| |||||| | ||| ||||| ||||| ||||||||| |||||||| |||||||||  |    
T  38010677 tttgattgatttgcatagtatgtcaaagacactatgtataggaatgataaaggatactaaccctaatgagcttaaagactaaagacccaacttaaagatc 38010776  T
Q  134 caactaataataactca-aaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaatat 219  Q
    ||||||| || |||||  || |||||||||||||| ||  |||||||| |||| ||||||| ||||||||| |||||||||||||||    
T  38010777 caactaaaaacaactctcaatgaaagacaaactaatataattatacttctaaattaaataggtaaattatttatttgagtctaatat 38010863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 3222964 - 3223143
Alignment:
Q  43 tttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaata 142  Q
    |||| ||||||||||||| |||||||||||||||  |||        |||||| |||||||||||| || |||||||||||||||| ||||||||||  |    
T  3222964 tttggatagtgtgtcaaagacactatatataggaaggatg-------gtaaccctaatgggcttaa-gactaaagacctaacttaa-ggcccaactagca 3223054  T
Q  143 ataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    | |||||||| ||| |||||||||| ||  || ||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  3223055 acaactcaaaagaaggacaaactaatataattttactcttaaactaaatagctaaattattcatttaagtctaatataactctctaaca 3223143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 1796954 - 1796905
Alignment:
Q  182 taaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  1796954 taaactaaatagttaaatcatttatttgagtctaatatcactctctaaca 1796905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 26542409 - 26542554
Alignment:
Q  86 catagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaataataactcaaaggaaagacaaactaacattcttatacttataaa 185  Q
    |||||||||| |||| ||||| | || ||||||||||| |||| ||||||||||  || |||| ||  ||| |||||||||| ||  || ||||   |||    
T  26542409 catagtaaccttaatcggcttga-gactaaagacctaatttaa-ggcccaactagcaacaactaaagtgaaggacaaactaatataattttactctgaaa 26542506  T
Q  186 ctaaatagctaaattattcatttgagtctaatatcactctctaacaat 233  Q
    ||||||| |||||||||||||||  |  |||||||||||| |||||||    
T  26542507 ctaaataactaaattattcatttaggcgtaatatcactctttaacaat 26542554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 14101284 - 14101144
Alignment:
Q  43 tttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaata 142  Q
    |||| ||||||||||||| |||||||||||||       || | ||||||||| ||||| || |||||| |||| |||||| |||||||||||||||| |    
T  14101284 tttggatagtgtgtcaaagacactatatatag-------aaaggatagtaaccctaatgagcctaaagactaaaaacctaatttaaaggcccaactaaaa 14101192  T
Q  143 ataactcaaaggaaagacaaactaacattcttatacttataaactaaa 190  Q
    | |||||||  |||||||||||||| ||  |||||||| |||||||||    
T  14101191 acaactcaattgaaagacaaactaatataattatacttttaaactaaa 14101144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 39643497 - 39643676
Alignment:
Q  43 tttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaata 142  Q
    |||| ||||||||||||| |||||||||||||||  ||||       |||||| |||| | ||||| || ||||||||||| |||| ||||||||||  |    
T  39643497 tttggatagtgtgtcaaagacactatatataggaaagata-------gtaaccttaatagacttaa-gactaaagacctaatttaa-ggcccaactagca 39643587  T
Q  143 ataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    | |||| ||  |||||| ||||| | ||  || ||||| ||||||| ||| |||||| ||| |||| |||||||| |||||||||||||    
T  39643588 acaacttaagtgaaagataaactgatataattttacttttaaactagatatctaaatcatttatttaagtctaatttcactctctaaca 39643676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 14099744 - 14099695
Alignment:
Q  182 taaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    ||||||||||| |||||||||| ||||||||||| |  ||||||||||||    
T  14099744 taaactaaatatctaaattatttatttgagtctagttgcactctctaaca 14099695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 39643298 - 39643248
Alignment:
Q  87 atagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaacta 139  Q
    ||||||||| |||||||||| |||| |||||||||||||| ||||||||||||    
T  39643298 atagtaaccctaatgggctt-aagactaaagacctaactt-aaggcccaacta 39643248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 22875 - 22709
Alignment:
Q  51 gtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaataataactca 150  Q
    |||||||||| |||||||||||| || |||||||   || ||| | ||| | |  |||||| |||||| ||||||||||||   |||||| || || | |    
T  22875 gtgtgtcaaagacactatatataagaatgataattgttaataaacttaacgagtctaaagactaaagaactaacttaaaggtttaactaaaaacaattta 22776  T
Q  151 aaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgagtctaat 217  Q
    ||||||||||| ||||| ||  || |||||||||||| |||| |||||| ||| |||| ||||||||    
T  22775 aaggaaagacagactaaaataattttacttataaacttaatatctaaatcatttatttaagtctaat 22709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 1923413 - 1923451
Alignment:
Q  266 gtcacttctatatatagttgttctaaattcaatgtgatg 304  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1923413 gtcacttctatatatagttgttctaaattcaatgtgatg 1923451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 27065778 - 27065611
Alignment:
Q  43 tttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaata 142  Q
    |||| ||||||||||||| ||||||||||||| | ||||  |  |||  |||  ||||| || |||||| |||| ||  || |||||||||||||||  |    
T  27065778 tttgcatagtgtgtcaaagacactatatatagaaatgatggtagataaaaactctaatgagcctaaagactaaaaactcaa-ttaaaggcccaactagca 27065680  T
Q  143 ataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgag 211  Q
    | ||||||||  ||||| ||||||| ||  || |||||||||| |||||| |||||||||| |||||||    
T  27065679 acaactcaaataaaagataaactaatataattttacttataaattaaatatctaaattatttatttgag 27065611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 27086881 - 27086714
Alignment:
Q  43 tttgaatagtgtgtcaaacacactatatataggagtgataatgcatagtaaccgtaatgggcttaaagattaaagacctaacttaaaggcccaactaata 142  Q
    |||| ||||||||||||| ||||||||||||| | ||||  |  |||  |||  ||||| || |||||| |||| ||  || |||||||||||||||  |    
T  27086881 tttgcatagtgtgtcaaagacactatatatagaaatgatggtagataaaaactctaatgagcctaaagactaaaaactcaa-ttaaaggcccaactagca 27086783  T
Q  143 ataactcaaaggaaagacaaactaacattcttatacttataaactaaatagctaaattattcatttgag 211  Q
    | ||||||||  ||||| ||||||| ||  || |||||||||| |||||| |||||||||| |||||||    
T  27086782 acaactcaaataaaagataaactaatataattttacttataaattaaatatctaaattatttatttgag 27086714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 10086 - 10037
Alignment:
Q  182 taaactaaatagctaaattattcatttgagtctaatatcactctctaaca 231  Q
    ||||||||||| |||||||||| ||||||||||| |  ||||||||||||    
T  10086 taaactaaatatctaaattatttatttgagtctagttgcactctctaaca 10037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4160 times since January 2019
Visitors: 8754