View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_16 (Length: 257)
Name: NF4410_high_16
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4410_high_16 |
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[»] scaffold0018 (1 HSPs) |
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[»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 43487489 - 43487631
Alignment:
Q |
101 |
tgcactcttatatatgacgcacggatacagaaacgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
200 |
Q |
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T |
43487489 |
tgcactcttatctatgacgtacggatacagaaacgacacaggcatgccaacaccgctaataaattgtgaaaatttcataattaagtgtaatcacatgtgt |
43487588 |
T |
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Q |
201 |
gagtgatttcaagacacacctaatttaaggaatgttcgtgctt |
243 |
Q |
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T |
43487589 |
gagtgatttcaggacacaccttttttaaggaatgttcgtgctt |
43487631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43487433 - 43487489
Alignment:
Q |
1 |
ttacttccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt |
57 |
Q |
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T |
43487433 |
ttacttccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt |
43487489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 44797035 - 44796971
Alignment:
Q |
135 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtg |
199 |
Q |
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T |
44797035 |
gacacagacatgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacatgtg |
44796971 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 21139089 - 21139028
Alignment:
Q |
113 |
tatgacgcacggatacagaaac-gacacagacatgccaacaccgttaataaattgagaaaat |
173 |
Q |
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T |
21139089 |
tatgaagcacggatacagacacagacactgacatgtcaacaccgttaataatttgagaaaat |
21139028 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 36281678 - 36281734
Alignment:
Q |
142 |
acatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgt |
198 |
Q |
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T |
36281678 |
acatgccaataccgttaataatttgagaaaatcacataatttagtgtaatcatatgt |
36281734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 12264904 - 12264837
Alignment:
Q |
133 |
acgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
200 |
Q |
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T |
12264904 |
acgacactgacatgccaacaccgctaattatttgagaaaattacatgattcagtgtaattatatgtgt |
12264837 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 32804607 - 32804548
Alignment:
Q |
141 |
gacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
200 |
Q |
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T |
32804607 |
gacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgt |
32804548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 4201394 - 4201438
Alignment:
Q |
147 |
ccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
191 |
Q |
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T |
4201394 |
ccaacaccgttaataatttgaaaaaatcacataattaagtgtaat |
4201438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 192322 - 192257
Alignment:
Q |
135 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
200 |
Q |
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||||| |||| ||| ||||||||||||| ||||||||||| ||||||| ||||||| ||| |||| |
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T |
192322 |
gacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaattacaagtgt |
192257 |
T |
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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 92793 - 92858
Alignment:
Q |
135 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
200 |
Q |
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||||| |||| ||| |||||| |||||| ||||||||||| ||||||| |||||||| ||| |||| |
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T |
92793 |
gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgt |
92858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 25038129 - 25038088
Alignment:
Q |
150 |
acaccgttaataaattgagaaaattgcataattaagtgtaat |
191 |
Q |
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T |
25038129 |
acaccgttaataatttgagaaaattacataatttagtgtaat |
25038088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 31579286 - 31579242
Alignment:
Q |
147 |
ccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
191 |
Q |
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T |
31579286 |
ccaacaccgttaataatttgagaaaatcacataattcagtgtaat |
31579242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 34073420 - 34073364
Alignment:
Q |
135 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
191 |
Q |
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||||| |||||||||||| || |||||| |||||||||| ||||||| |||||||| |
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T |
34073420 |
gacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaat |
34073364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 25452221 - 25452165
Alignment:
Q |
135 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
191 |
Q |
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||||| ||||||||||||| | |||||| |||||||||| ||||||| |||||||| |
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T |
25452221 |
gacaccgacatgccaacactgctaataatttgagaaaatctcataattcagtgtaat |
25452165 |
T |
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