View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_18 (Length: 252)
Name: NF4410_high_18
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_18 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 1034334 - 1034091
Alignment:
| Q |
9 |
agcagagaagctagtatggataaaaaatgctactataagcaacaaaattcttaattaagtgaacaaatttgcaaggagaaaaaacttattaaatatggag |
108 |
Q |
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| T |
1034334 |
agcagtgaagctagtatggataaaaaatgctactataagcaacaaaattcttaattaagtgaacaaatttgcaaggagaaaaaacttattaaatatggag |
1034235 |
T |
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| Q |
109 |
gttccacttccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatg |
208 |
Q |
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| T |
1034234 |
gttccacttccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatg |
1034135 |
T |
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| Q |
209 |
tctccctgttatatttattgagaggagcgtttagtgcaaatctc |
252 |
Q |
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| T |
1034134 |
tctccctgttatatttattgagaggagcgtttagtgcaaatctc |
1034091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 1044613 - 1044478
Alignment:
| Q |
117 |
tccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctg |
216 |
Q |
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| T |
1044613 |
tccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctcccta |
1044514 |
T |
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| Q |
217 |
ttatatttattgagaggagcgtttagtgcaaatctc |
252 |
Q |
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| T |
1044513 |
ttatacttgttgagaggagcattaagtgcaaatctc |
1044478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 252
Target Start/End: Complemental strand, 1066197 - 1066093
Alignment:
| Q |
148 |
tttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaa |
247 |
Q |
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| T |
1066197 |
tttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaa |
1066098 |
T |
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| Q |
248 |
atctc |
252 |
Q |
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||||| |
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| T |
1066097 |
atctc |
1066093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 1059116 - 1059001
Alignment:
| Q |
137 |
tacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagc |
236 |
Q |
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| T |
1059116 |
tacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagc |
1059017 |
T |
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| Q |
237 |
gtttagtgcaaatctc |
252 |
Q |
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| T |
1059016 |
attaagtgcaaatctc |
1059001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 1053833 - 1053736
Alignment:
| Q |
155 |
attcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctc |
252 |
Q |
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| T |
1053833 |
attcaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctc |
1053736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 1071921 - 1071820
Alignment:
| Q |
151 |
cttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatc |
250 |
Q |
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| T |
1071921 |
cttcattcaagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatc |
1071822 |
T |
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| Q |
251 |
tc |
252 |
Q |
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|| |
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| T |
1071821 |
tc |
1071820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 1640371 - 1640449
Alignment:
| Q |
158 |
caagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagc |
236 |
Q |
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| T |
1640371 |
caagaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagc |
1640449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 252
Target Start/End: Complemental strand, 1047189 - 1047064
Alignment:
| Q |
128 |
atgctacaa-tacaacattgttttcttcattcaagaaagggatagtctgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttat |
226 |
Q |
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| T |
1047189 |
atgctacaagtacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgt |
1047090 |
T |
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| Q |
227 |
tgagaggagcgtttagtgcaaatctc |
252 |
Q |
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| T |
1047089 |
ttaggggagcattaagtgcaaatctc |
1047064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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