View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_19 (Length: 250)
Name: NF4410_high_19
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 8600060 - 8599961
Alignment:
| Q |
138 |
tgcaaaaatgatccatatcttcatttccatctttccaccattcattttctaggaagaaggaaggaacaacacaatagaatcaaatcaaactaactagttc |
237 |
Q |
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| T |
8600060 |
tgcaaaaatgatccatatcttcatttccatctttccaccattcattttctaggaagaaggaaagaacaacacaatagaatcaaatcaaactaactagttc |
8599961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3076405 - 3076305
Alignment:
| Q |
1 |
atcgcccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaat |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076405 |
atcgcccgtggttttttacttctcatatttaggagttttccatgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaat |
3076306 |
T |
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| Q |
101 |
t |
101 |
Q |
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| |
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| T |
3076305 |
t |
3076305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29470931 - 29471036
Alignment:
| Q |
1 |
atcgcccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaat |
100 |
Q |
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| T |
29470931 |
atcgcccgtggttttttagttctcatattgaggagttttccatgtaaatcttgtgtgttttttctcttgttattttacttacttctctttaattctcaat |
29471030 |
T |
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| Q |
101 |
tgcatc |
106 |
Q |
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| |||| |
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| T |
29471031 |
ttcatc |
29471036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3072880 - 3072818
Alignment:
| Q |
1 |
atcgcccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttattt |
63 |
Q |
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| T |
3072880 |
atcgcccgtggttttttacttctcatattgaggagttttccacgtaaatcttgtgtgttattt |
3072818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 8564928 - 8564830
Alignment:
| Q |
9 |
tggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgtta-tttctcttgttattttacttacttctctttaattctcaattgcatc |
106 |
Q |
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| T |
8564928 |
tggttttttacttctcatattgaggagttttcaacgtaaatcttgtgtgttaatttctcttgttattttacttacttctctttaattctcaatagcatc |
8564830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 106
Target Start/End: Original strand, 23043804 - 23043835
Alignment:
| Q |
75 |
ttacttacttctctttaattctcaattgcatc |
106 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23043804 |
ttacttacttctctttaattctcaattgcatc |
23043835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 106
Target Start/End: Original strand, 23048159 - 23048190
Alignment:
| Q |
75 |
ttacttacttctctttaattctcaattgcatc |
106 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23048159 |
ttacttacttctctttaattctcaattgcatc |
23048190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 15241616 - 15241524
Alignment:
| Q |
14 |
ttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaattgcatc |
106 |
Q |
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|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
15241616 |
tttttcttctcatattgaggagttttccacgtaaatcttgtgtgttatttctcttattattttacttacttctctttgattctcaattgcatc |
15241524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 15114121 - 15114220
Alignment:
| Q |
1 |
atcgcccgtggttttttacttctcatattgaggagtttttcacgtaaatcatgtgtgttatttctcttgttattttacttacttctctttaattctcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114121 |
atcgcccgtggttttttacttctcatattgag------tccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaat |
15114214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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