View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_2 (Length: 537)
Name: NF4410_high_2
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 17109778 - 17110266
Alignment:
| Q |
1 |
gtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109778 |
gtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactcta |
17109877 |
T |
|
| Q |
101 |
aatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109878 |
aatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataa |
17109977 |
T |
|
| Q |
201 |
aacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaaccttatggaa- |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109978 |
aacgtttaccgaaggagggtctacctagatccatatcaactttacagatttcggggaactgtccattccttttagaaagatgcaagaaaccttatggaaa |
17110077 |
T |
|
| Q |
300 |
----------aggattgcgcatattcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatt |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110078 |
ggattgcgagaggattgcgcatattcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatt |
17110177 |
T |
|
| Q |
390 |
tacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
478 |
Q |
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| T |
17110178 |
tacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
17110266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 17030328 - 17030608
Alignment:
| Q |
11 |
aatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactg |
110 |
Q |
| |
|
|||||||| |||| | ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||| || |
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| T |
17030328 |
aatacatcgctctttaccatgtatattcaagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtg |
17030427 |
T |
|
| Q |
111 |
gttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttacc |
210 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || |
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| T |
17030428 |
gttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgcc |
17030527 |
T |
|
| Q |
211 |
gaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
291 |
Q |
| |
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||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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| T |
17030528 |
aaaggagggtcttcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17030608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 17048666 - 17048946
Alignment:
| Q |
11 |
aatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactg |
110 |
Q |
| |
|
|||||||| |||| | ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||| || |
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| T |
17048666 |
aatacatcgctctttaccatgtatattcaagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtg |
17048765 |
T |
|
| Q |
111 |
gttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttacc |
210 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || |
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| T |
17048766 |
gttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgcc |
17048865 |
T |
|
| Q |
211 |
gaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
291 |
Q |
| |
|
||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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| T |
17048866 |
aaaggagggtcttcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17048946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 16978456 - 16978736
Alignment:
| Q |
11 |
aatacatctctctgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactg |
110 |
Q |
| |
|
||||||||||||| | |||||||||| |||||| ||||||||||| |||||| |||||||||||| |||| |||||||||| ||||||||| || |
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| T |
16978456 |
aatacatctctctctaacatgtatattcaagaattagatgtggagttttttcctaatcaagggttgcttcctatctctcttacttatctaaatatttgtg |
16978555 |
T |
|
| Q |
111 |
gttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttacc |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || |
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| T |
16978556 |
gttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgcc |
16978655 |
T |
|
| Q |
211 |
gaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
291 |
Q |
| |
|
||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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|
| T |
16978656 |
aaaggagggtctgcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
16978736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 477 - 537
Target Start/End: Original strand, 17110288 - 17110348
Alignment:
| Q |
477 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgt |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17110288 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgt |
17110348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 14313962 - 14314008
Alignment:
| Q |
47 |
gatgtggagtcttttcccaatcaagggttgattccactctctcttac |
93 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||| ||||||||| |
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|
| T |
14313962 |
gatgtggagtcttttcccgatcaagggttgcttccacgctctcttac |
14314008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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