View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_20 (Length: 250)
Name: NF4410_high_20
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 39738182 - 39738305
Alignment:
| Q |
53 |
ttaactcggttggtagagacattacatatattatatgtaagggttggaagttcgagcctcgaacactctgtttattcatcttataaagataaaattaaac |
152 |
Q |
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| T |
39738182 |
ttaactcggttggtagagacattacatatattatatgtaagggtcggaagttcaagcctcgaacattctgtttgttcatcttataaagataaaattaaac |
39738281 |
T |
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| Q |
153 |
tcttccgaccgttatttgaatttt |
176 |
Q |
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||||||||| |||||||||||||| |
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| T |
39738282 |
tcttccgactgttatttgaatttt |
39738305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 39738265 - 39738326
Alignment:
| Q |
178 |
taaaaataaaattaaactcttccgactgttatttgaatttttcgcttggttcttcccccttt |
239 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39738265 |
taaagataaaattaaactcttccgactgttatttgaatttttcgcttggttcttcccccttt |
39738326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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