View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_22 (Length: 250)
Name: NF4410_high_22
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_22 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32325909 - 32325678
Alignment:
| Q |
1 |
tcacttcaatttttcatttcactcttttaaacctaaagtattttgcttttcacgtcgttttaactttaatgacgtgnnnnnnnntacataannnnnnn-- |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32325909 |
tcacttcaatttttcatttcactcttttaaacctaaagtattttgcttttcacgtcgttttaactttaatgacgtgaaaaaaaatacataatattttttt |
32325810 |
T |
|
| Q |
99 |
--ggattctttgatgtctcggcaacctctcaaggagttgagatatactactgtcaataggtattatattgtggtaagagatggtgaagagacatcataga |
196 |
Q |
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| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
32325809 |
ttgtattatttgatgtctcggcaacctctcaaggagtcgagatatactgctgtcaatcggtattatattgcggtaagagagggtgaagagacatcataga |
32325710 |
T |
|
| Q |
197 |
tannnnnnnctttctccttttaccccttttaa |
228 |
Q |
| |
|
|| ||||||||||||||||||||||| |
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|
| T |
32325709 |
tatttttttctttctccttttaccccttttaa |
32325678 |
T |
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