View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_24 (Length: 246)
Name: NF4410_high_24
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_24 |
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| [»] chr7 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 45 - 246
Target Start/End: Original strand, 29470749 - 29470946
Alignment:
| Q |
45 |
atcacaaaaccaattacaaacgcactttgtaacatgcacttgagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattaa |
144 |
Q |
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| T |
29470749 |
atcacataaccaattacaaacacactttgtaacatacacttaagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattga |
29470848 |
T |
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| Q |
145 |
gagaaaatattgtcttttgtcctcattactataagaggacttgttgtactcttttcttttacatatatagtggaactttgctcgtgatcgcccgtggttt |
244 |
Q |
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| T |
29470849 |
gagaaaatattgtcctttgtcctcattactataagaggacttgctatactcttttcttttac----atagtggaactttgctcttgatcgcccgtggttt |
29470944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 3073059 - 3072865
Alignment:
| Q |
48 |
acaaaaccaattacaaacgcactttgtaacatgcacttgagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattaagag |
147 |
Q |
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| T |
3073059 |
acaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttcgagagtattttaggagatattgagag |
3072960 |
T |
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| Q |
148 |
aaaatattgtcttttgtcctcattactataagaggacttgttgtactcttttcttttacatatatagtggaactttgctcgtgatcgcccgtggttttt |
246 |
Q |
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| T |
3072959 |
aaaattttgtcctttgtcctcatcactataagaggacttgttgtactcttttcttttac----atagtggaactttgctctcgatcgcccgtggttttt |
3072865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 3076587 - 3076390
Alignment:
| Q |
45 |
atcacaaaaccaattacaaacgcactttgtaacatgcacttgagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattaa |
144 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3076587 |
atcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattga |
3076488 |
T |
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| Q |
145 |
gagaaaatattgtcttttgtcctcattactataagaggacttgttgtactcttttcttttacatatatagtggaactttgctcgtgatcgcccgtggttt |
244 |
Q |
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| T |
3076487 |
gagaaaattttgtcatttgtcctcatcactataagaagacttgttgtactcttttcttt----tatatagtggaactttgctctcaatcgcccgtggttt |
3076392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 67 - 246
Target Start/End: Original strand, 15113961 - 15114136
Alignment:
| Q |
67 |
cactttgtaacatgcacttgagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattaagagaaaatattgtcttttgtcc |
166 |
Q |
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| T |
15113961 |
cactttgtaacatacacttgagtgtacttttggtgagaattcttgttccatttgagagagtattttaggagatattgggagaaaatattgtcctttgtcc |
15114060 |
T |
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| Q |
167 |
tcattactataagaggacttgttgtactcttttcttttacatatatagtggaactttgctcgtgatcgcccgtggttttt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15114061 |
tcattactataagaggacttgttgtactcttttcttttac----atagtggaactttgctcgtgatcgcccgtggttttt |
15114136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 15241792 - 15241612
Alignment:
| Q |
62 |
aaacgcactttgtaacatgcacttgagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattaagagaaaatattgtcttt |
161 |
Q |
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|||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15241792 |
aaacacactttgtaacatacacttgagtgtattttttgtgagaattcttgttccattttagagagtattttaggagatattaagagaaaatattgtcctt |
15241693 |
T |
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| Q |
162 |
tgtcctcattactataagaggacttgttgtactcttttcttttacatatatagtggaactttgctcgtgatcgcccgtggttttt |
246 |
Q |
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|||||||||||||| ||||||| || ||||||| ||||||||||| ||||||||||||||||||||| | ||| |||||||| |
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| T |
15241692 |
tgtcctcattactacaagaggatttattgtacttttttcttttac----atagtggaactttgctcgtgaccacccatggttttt |
15241612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 8565113 - 8564954
Alignment:
| Q |
50 |
aaaaccaattacaaacgcactttgtaacatgcacttgagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattaagagaa |
149 |
Q |
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|||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||| |
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| T |
8565113 |
aaaaccaattacaaacacactttgtaacatacacttgggtgtattttttgtgagaattcttgttccattttagagagtattttaggaaatattgagtgaa |
8565014 |
T |
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| Q |
150 |
aatattgtcttttgtcctcattactataagaggacttgttgtactcttttcttttacata |
209 |
Q |
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|||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8565013 |
aatattatcctttgtcctcatcactataagaggacttgttgtactcttttcttttacata |
8564954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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