View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_26 (Length: 242)
Name: NF4410_high_26
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 1923707 - 1923948
Alignment:
| Q |
3 |
ttagatttaaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgtt |
102 |
Q |
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| T |
1923707 |
ttagatttaaatttgaataagatttcaattgttaaggataagtttatcccaatatatgttttacatgtgttaaatatatttacatatataacgttgtgtt |
1923806 |
T |
|
| Q |
103 |
atta----gagatcacgtatggctcttcatcagttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatg |
198 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1923807 |
attaattagagatcacgtatggctcttcatcagttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatg |
1923906 |
T |
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| Q |
199 |
catgtcggcaagcgtaggtggatattatgagatttttctgtg |
240 |
Q |
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| T |
1923907 |
catgtcggcaagcgtaggtggatattatgagatttttctgtg |
1923948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 17498830 - 17498947
Alignment:
| Q |
11 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
110 |
Q |
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| T |
17498830 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17498929 |
T |
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| Q |
111 |
tcacgtatggctcttcat |
128 |
Q |
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| T |
17498930 |
tcacgtatggctcttcat |
17498947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 17554384 - 17554267
Alignment:
| Q |
11 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17554384 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17554285 |
T |
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| Q |
111 |
tcacgtatggctcttcat |
128 |
Q |
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|||||||||||||||||| |
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| T |
17554284 |
tcacgtatggctcttcat |
17554267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 17498951 - 17498998
Alignment:
| Q |
157 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
204 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17498951 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17498998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 17554263 - 17554216
Alignment:
| Q |
157 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
204 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17554263 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17554216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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