View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_31 (Length: 231)
Name: NF4410_high_31
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 30644917 - 30645027
Alignment:
| Q |
2 |
catcagcagcaagcaaacagtgtaaccaatacacattcaacttcgacacagacccaattattatcaacatccaaaaaactttgagttacacagatttaag |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
30644917 |
catcagcagcaagcaaacagtgtaaccaatacacattcaacttcaacacagacccaattattatcaacatccaaaaaacattgatttacacagatttaag |
30645016 |
T |
|
| Q |
102 |
ataacccggtt |
112 |
Q |
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||||||||||| |
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| T |
30645017 |
ataacccggtt |
30645027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 30645106 - 30645146
Alignment:
| Q |
191 |
ttacctcccaacaccaaagacatgaatcagaatgatcttcc |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
30645106 |
ttacctcccaacaccaaagacatgaatcagaatgatcttcc |
30645146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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