View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_32 (Length: 219)
Name: NF4410_high_32
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 7122426 - 7122624
Alignment:
| Q |
1 |
acagtgctaccttcttccactcaccaccattttccttcttcacatattccataacaccacggagaaattattctaaatcgcttaaggaaatccaaattcg |
100 |
Q |
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| T |
7122426 |
acagtgttaccttcttccactcaccaccattttccttcttcacatattccataacaccacggagaaattcttctaaatcgcttaaggaaatccaaattcg |
7122525 |
T |
|
| Q |
101 |
aattctccatcgaaaatgggaaccctaggaaaagcaatatacagcgttggattttggattcgagaaactggacaagccattgatcgcctcggttctcgc |
199 |
Q |
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| T |
7122526 |
aattctccatcgaaaatgggaaccctaggaaaagcaatatacagcgttggattttggattcgagaaactggacaagccattgatcgtctcggttctcgc |
7122624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 52412467 - 52412550
Alignment:
| Q |
114 |
aaatgggaaccctaggaaaagcaatatacagcgttggattttggattcgagaaactggacaagccattgatcgcctcggttctc |
197 |
Q |
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| T |
52412467 |
aaatgggaaccctcggaagagcgatatacagcgttggacagttgattcgaaaaactggacaagccgttgatcgcctcggttctc |
52412550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 7990248 - 7990306
Alignment:
| Q |
140 |
tacagcgttggattttggattcgagaaactggacaagccattgatcgcctcggttctcg |
198 |
Q |
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|||| ||| ||||| ||||| || |||||||| |||||||||||||| ||||||||||| |
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| T |
7990248 |
tacaccgtcggattctggatccgcgaaactggtcaagccattgatcgtctcggttctcg |
7990306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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