View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_34 (Length: 217)
Name: NF4410_high_34
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4410_high_34 |
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[»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 25809166 - 25809048
Alignment:
Q |
78 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtgaagttcaatgagatgggggtctgggtatgagagaga |
177 |
Q |
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T |
25809166 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagttcaatgagatgggggtctgggtatgagagaga |
25809067 |
T |
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Q |
178 |
tggagttagaagtggggtt |
196 |
Q |
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T |
25809066 |
tggggttagaagtggggtt |
25809048 |
T |
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Target: scaffold0011 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 135830 - 135712
Alignment:
Q |
78 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtgaagttcaatgagatgggggtctgggtatgagagaga |
177 |
Q |
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T |
135830 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagtttaattagatgggggtctgggtatgagagaga |
135731 |
T |
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Q |
178 |
tggagttagaagtggggtt |
196 |
Q |
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T |
135730 |
tggggttagaagtggggtt |
135712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 23068249 - 23068367
Alignment:
Q |
78 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtgaagttcaatgagatgggggtctgggtatgagagaga |
177 |
Q |
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T |
23068249 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagtttaattagatgggggtctgggtatgagagaga |
23068348 |
T |
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Q |
178 |
tggagttagaagtggggtt |
196 |
Q |
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T |
23068349 |
tggggttagaagtggggtt |
23068367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 20746447 - 20746369
Alignment:
Q |
78 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatggg-ttcaatgggttgtgagaagtgaagttcaatgagat |
155 |
Q |
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T |
20746447 |
tatacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtgagaagtggagttcaatgagat |
20746369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 26909101 - 26909178
Alignment:
Q |
78 |
tatacctgtgtgggtgcatgcttgtaatgagatgagagatggg-ttcaatgggttgtgagaagtgaagttcaatgaga |
154 |
Q |
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T |
26909101 |
tatacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtgagaagtggagttcaatgaga |
26909178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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