View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_high_4 (Length: 472)
Name: NF4410_high_4
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 39 - 359
Target Start/End: Original strand, 29797678 - 29797999
Alignment:
| Q |
39 |
cctacttaaaaacggtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagct |
138 |
Q |
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| T |
29797678 |
cctacttaaaaacggtgacaaggttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagct |
29797777 |
T |
|
| Q |
139 |
aacaagtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaag |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29797778 |
aacaagtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaag |
29797877 |
T |
|
| Q |
239 |
tgataacacttgcacatgcacttagttgtaatgcgttgcatg-ttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29797878 |
tgataacacttgcacatgcacttagttgtaatgcgttgcatgtttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatg |
29797977 |
T |
|
| Q |
338 |
ttaaacatgaaatcttcatttt |
359 |
Q |
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|||||||||||||||||||||| |
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| T |
29797978 |
ttaaacatgaaatcttcatttt |
29797999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 53 - 359
Target Start/End: Complemental strand, 49600999 - 49600694
Alignment:
| Q |
53 |
gtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagctaacaagtttcttaa |
152 |
Q |
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||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
49600999 |
gtgacaaggttgatacttatgt--gtctagcaaatcgggaatggagagccacatgcatcagaaaccttgatggcattgggagagttaacaaatttcttaa |
49600902 |
T |
|
| Q |
153 |
ggttaggatctttcaaatattggcaaagg-aaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaagtgataacacttgc |
251 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||| |
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| T |
49600901 |
ggttaggatctttcaaatattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaatgatggcatttgc |
49600802 |
T |
|
| Q |
252 |
acatgcacttagttgtaatgcgttgcatgttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatgttaaacatgaaatc |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| || ||||||||||||||||| | |||||||| |
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| T |
49600801 |
acatgcacttagttgtaatgcgttgcatgttatttccattgataactctgtctttgcaagcagtacagtaagcataatgcacaatgttacatatgaaatc |
49600702 |
T |
|
| Q |
352 |
ttcatttt |
359 |
Q |
| |
|
|||||||| |
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| T |
49600701 |
ttcatttt |
49600694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 4490064 - 4489973
Alignment:
| Q |
170 |
tattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaagtgataacacttgcacatgcactt |
261 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
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| T |
4490064 |
tattggcaaaggaaggctttcgctccttcagtttactgcaacaaattgcagaaggagggttggatgaagttatagcacttgcacatgcactt |
4489973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 4489269 - 4489226
Alignment:
| Q |
316 |
acaacaaccataatgcacaatgttaaacatgaaatcttcatttt |
359 |
Q |
| |
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|||| ||||||||| ||||||||||||||| ||||||||||||| |
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| T |
4489269 |
acaataaccataatccacaatgttaaacataaaatcttcatttt |
4489226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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