View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_low_1 (Length: 646)
Name: NF4410_low_1
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 41255723 - 41256247
Alignment:
| Q |
18 |
gcttcaacaaacaatcattttgcatggtgctgtcgcctcaatcttctctaacaaagctacatttattgaacttaaagactatctaaggatcaacactgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41255723 |
gcttcaacaaacaatcattttgcatggtgctgtcgcctcaatcttctctaacaaagctacatttattgaacttaaagactctctaaggatcaacactgtt |
41255822 |
T |
|
| Q |
118 |
ttgaggtgatcttagtactattatctactaaatgcttttgtatttcagtgctagactacaagtatccgaggtacatcaaatcaagattaaatattttacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41255823 |
ttgaggtgatcttagtactattatctactaaatgcttttgtatttcagtgctagactacaagtatccgaggtacatcaaatcaagtttaaatattttacc |
41255922 |
T |
|
| Q |
218 |
gttcacacccccactagaaatnnnnnnnccaaacatttcaatgacatattaatgatgaagaacagtggtatttatgaatgacaatttcaatgtggatgga |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41255923 |
gttcacacccccactagaaataaaaaaaccaaacatttcaatgacatattaatgatgaagaacagtggtatttatgaatgacaatttcaatgtggatgga |
41256022 |
T |
|
| Q |
318 |
tgctcagttttttcttccctcagtgcctaattacaaacagcatatttaactctcattggacatgcatagtagtatattacccttttatttatataacctc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41256023 |
tgctcagttttttcttccctcagtgcctaattacaaacagcatatttaactctcattggacatgcatagtagtatattacccttttatttatataacctc |
41256122 |
T |
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| Q |
418 |
cacttgcagtacttgtaataataaagagacaaaataactaactaccctaaattaagtatatatgcagctacatatattattactactccataaacattac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41256123 |
cacttgcagtacttgtaataataaagagacaaaataactaactaccctaaattaagtatatatgcagctacatatattattactactccataaacattac |
41256222 |
T |
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| Q |
518 |
tcctttagcactactatcactatat |
542 |
Q |
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||||||||||||||||||||||||| |
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| T |
41256223 |
tcctttagcactactatcactatat |
41256247 |
T |
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