View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_low_10 (Length: 374)
Name: NF4410_low_10
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_10 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 35830087 - 35829732
Alignment:
| Q |
19 |
ttagagtctcatgcagaatgtttatccacaactcaccacctgagacatcgacaaaaggaaattcaccggtctgaattttcatttcaggactctgaagtga |
118 |
Q |
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| T |
35830087 |
ttagagtctcatgcagaatgtttatccacaactcaccacctgagacatcgacaaaaggaaattcaccggtctgaattttcatttcaggactctgaagtga |
35829988 |
T |
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| Q |
119 |
ctccattttgatgactagtccttgatgtgcttgtgcttgaccttgaagggaatgtccatggcctctagcagctaccttcaactctgaatcagatcctttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35829987 |
ctccattttgatgactagtccttgatgtgcttgtgcttgaccttgaagggaatgtccatggcctctagcagctaccttcaactctgaatcagaccctttt |
35829888 |
T |
|
| Q |
219 |
tcaaaaatatgttttacggtacgtgaaatatctgaaacagtttttggatgcaacactgctagaggaggaaaacggtgtatgttgccaaagtcctttgcag |
318 |
Q |
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| T |
35829887 |
tcaaaaatatgttttacggtacgtgaaatatctgaaacagtttttggatgtaacactgctagaggaggaaaatggtgtatgttgccaaagtcctttgcag |
35829788 |
T |
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| Q |
319 |
catcttcattgtcctttaagctcaaatgtccatcaaaggattgtgattgtagtgat |
374 |
Q |
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| T |
35829787 |
catcttcattgtcctttaagctcaaatggccatcaaaggattgtgattgtagtgat |
35829732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 54398 - 54354
Alignment:
| Q |
23 |
agtctcatgcagaatgtttatccacaactcaccacctgagacatc |
67 |
Q |
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| T |
54398 |
agtctcatgcaagatgtttatccacaattcaccaccagagacatc |
54354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 14785332 - 14785376
Alignment:
| Q |
23 |
agtctcatgcagaatgtttatccacaactcaccacctgagacatc |
67 |
Q |
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||||||||||| |||||||||||||| |||||||| |||||||| |
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| T |
14785332 |
agtctcatgcaagatgtttatccacaattcaccaccagagacatc |
14785376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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