View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_low_15 (Length: 313)
Name: NF4410_low_15
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 18338220 - 18338501
Alignment:
| Q |
11 |
cacagaaaccaactactctcagatttaatacactggtggatcaaacattgtttcagttaggatttgctctaataagtaatactactaattaagtccttct |
110 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18338220 |
cacagaaaccaactactctcagatttaacacactggtggatcaaacattgtttcagttaggatttgctctaataagtaatact---aattaagtccttct |
18338316 |
T |
|
| Q |
111 |
aaaaccaattcaagtaacataatgacaggtataatttttcacacggcgtgcatatttggaaacacgacgagtatgtgtcaccgtgattttactgagtttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18338317 |
aaaaccaattcaagtaacataatgacaggtataatttttcacacggtgtgcatatttggaaacacaacgagtatgtgtcaccgtgattttactgagtttc |
18338416 |
T |
|
| Q |
211 |
taaagtgtaaattttgtcaaaaccacgatgacacattccaaactcactgtcaatgcaagtaaccacaaaaaggttcctacattat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
18338417 |
taaagtgtaaattttgtcaaaaccacgatgacacattccaaactcagtgtcaatgcaagtaaccacaaaaaggctcctacattat |
18338501 |
T |
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