View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4410_low_16 (Length: 302)
Name: NF4410_low_16
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_16 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 5921511 - 5921242
Alignment:
| Q |
20 |
ctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5921511 |
ctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcatcctacttcgtcgaat |
5921412 |
T |
|
| Q |
120 |
ggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||| |
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|
| T |
5921411 |
ggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaat |
5921312 |
T |
|
| Q |
220 |
gttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggtacacaggt |
289 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5921311 |
gttccgaagggtgagtgagcagtttactgctatgttcaggagaaaggctttcttgcattggtacacaggt |
5921242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 5934971 - 5934702
Alignment:
| Q |
20 |
ctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
5934971 |
ctcactgcatcagccatcttcagaggcaagatgagcacaaaggaagttgatgaacaaatgatcaatgttcagaacaagaactcatcctacttcgttgaat |
5934872 |
T |
|
| Q |
120 |
ggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||| |
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|
| T |
5934871 |
ggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaat |
5934772 |
T |
|
| Q |
220 |
gttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggtacacaggt |
289 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5934771 |
gttccgaagggtgagtgagcagtttactgctatgttcaggagaaaggctttcttgcattggtacacaggt |
5934702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 5532522 - 5532787
Alignment:
| Q |
20 |
ctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaat |
119 |
Q |
| |
|
|||||||| |||||||| || |||||||| |||||||| || || ||||||||||||||||| ||||| |||||||||||||| |||||||| || |||| |
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|
| T |
5532522 |
ctcactgcttcagccatgtttagaggcaagatgagcaccaaggaggttgatgaacaaatgatgaatgtccagaacaagaactcatcctactttgttgaat |
5532621 |
T |
|
| Q |
120 |
ggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaat |
219 |
Q |
| |
|
|||||||||||||||| || || ||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||| |
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|
| T |
5532622 |
ggattccaaacaatgtgaagtctactgtctgtgatattcccccaacagggttgaaaatggcttcaacattcattggaaactccacatccattcaggaaat |
5532721 |
T |
|
| Q |
220 |
gttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggtacac |
285 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5532722 |
gttccgtagggtgagtgagcagttcactgctatgttcaggagaaaggctttcttgcattggtacac |
5532787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 38177238 - 38177030
Alignment:
| Q |
77 |
atgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaaga |
176 |
Q |
| |
|
||||| ||||| |||||||| ||||| || ||||| || || ||||| || ||||| ||||| || | || |||||||| |||||||| || | ||| |
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|
| T |
38177238 |
atgattaatgtacagaacaaaaactcttcttactttgttgagtggatacccaacaacgtcaagtctagcgtgtgtgatataccaccaacgggtcttaagt |
38177139 |
T |
|
| Q |
177 |
tggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgca |
276 |
Q |
| |
|
|||| || || |||||||| || || ||||| ||||| || |||||| | || || || || |||||||| |||||||| ||| | |||||||||||||| |
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|
| T |
38177138 |
tggcatccactttcattggcaattcaacatctattcaagagatgttcaggagagtcagcgagcagttcacagctatgtttaggcgcaaggctttcttgca |
38177039 |
T |
|
| Q |
277 |
ttggtacac |
285 |
Q |
| |
|
||||||||| |
|
|
| T |
38177038 |
ttggtacac |
38177030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 40916555 - 40916377
Alignment:
| Q |
44 |
ggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaa |
143 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||| |
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|
| T |
40916555 |
ggcaaaatgagcacaaaagaagttgatcaacagatgataaatgttcagaacaagaactcgtcttactttgtggaatggattccaaacaatgtgaaatcaa |
40916456 |
T |
|
| Q |
144 |
ctgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgtt |
222 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| |||| || || || || || |||||||| ||||| |||||||| |
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|
| T |
40916455 |
gtgtttgtgatattccgccaacagggttgtcgatgtcttcgacatttatggggaattcgacatctattcaagaaatgtt |
40916377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 282
Target Start/End: Original strand, 45320319 - 45320560
Alignment:
| Q |
41 |
agaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaat |
140 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| | || ||||| ||||||||||| || || |||||||| ||||||||||| || ||||| || | |
|
|
| T |
45320319 |
agagggaaaatgagcacaaaagaagtggatgaacaggtaatgaatgtgcagaacaagaattcttcttacttcgttgaatggattcccaataatgtgaagt |
45320418 |
T |
|
| Q |
141 |
caactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaaca |
240 |
Q |
| |
|
| | ||| |||||| | ||||| | ||| | ||||||||| || || |||| || |||||||| || ||||| ||||| | || ||||||||||| |
|
|
| T |
45320419 |
ccagtgtctgtgatgtcccacctagaggcctttcgatggcttcgacatttgttggcaattcgacatctatacaggagatgtttaggagagtgagtgaaca |
45320518 |
T |
|
| Q |
241 |
gttcactgctatgttcaggagaaaggctttcttgcattggta |
282 |
Q |
| |
|
|||| |||| |||||||| || || || |||||||||||||| |
|
|
| T |
45320519 |
gttctctgccatgttcagaaggaaagcattcttgcattggta |
45320560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 50 - 282
Target Start/End: Complemental strand, 45452683 - 45452451
Alignment:
| Q |
50 |
atgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgttt |
149 |
Q |
| |
|
|||||||| || || |||||||| || ||||||||||||||||||||||| || || ||||| || || |||||||| |||||||| ||||| ||||| | |
|
|
| T |
45452683 |
atgagcaccaaggaggttgatgagcagatgatcaatgttcagaacaagaattcatcatactttgttgagtggattcccaacaatgtgaaatccactgtct |
45452584 |
T |
|
| Q |
150 |
gtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactgc |
249 |
Q |
| |
|
||||||| || ||||| || | || ||||||||||| || ||||| ||||| ||||| ||||| |||||||| | ||||||||||| || ||||| || |
|
|
| T |
45452583 |
gtgatatccctccaactggtcttaaaatggcttctacttttattggtaactccacatctattcaagaaatgtttaggagggtgagtgagcaattcacggc |
45452484 |
T |
|
| Q |
250 |
tatgttcaggagaaaggctttcttgcattggta |
282 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||| |
|
|
| T |
45452483 |
tatgttccgcagaaaagctttcttgcattggta |
45452451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 53146304 - 53146045
Alignment:
| Q |
23 |
actgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatgga |
122 |
Q |
| |
|
|||||||| || || |||||||| || |||||||| ||||| |||||||||||||| |||||||| ||||||||||| || || ||||| || ||||||| |
|
|
| T |
53146304 |
actgcatctgcaatgttcagaggaaagatgagcaccaaagaggttgatgaacaaatcatcaatgtgcagaacaagaattcttcatactttgttgaatgga |
53146205 |
T |
|
| Q |
123 |
ttccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgtt |
222 |
Q |
| |
|
|||| |||||||| || || | ||| |||||||| ||||| | ||||||||| | || || || ||||| ||||| || ||||||||||| ||||| |
|
|
| T |
53146204 |
ttcccaacaatgtgaagtctagtgtgtgtgatatcccacccaagaatttgaagatgtcgtccacttttattgggaactctacttcaattcaggagatgtt |
53146105 |
T |
|
| Q |
223 |
ccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggta |
282 |
Q |
| |
|
| | ||||| ||||| ||||| ||||| |||||| || | ||||| || ||||||||||| |
|
|
| T |
53146104 |
caggagggtcagtgagcagtttactgcaatgttccggcgcaaggcctttttgcattggta |
53146045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 34841591 - 34841856
Alignment:
| Q |
20 |
ctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaat |
119 |
Q |
| |
|
|||||||| || ||||| ||||| || || |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||| |||||||| || || | |
|
|
| T |
34841591 |
ctcactgcgtctgccatgttcaggggtaagatgagcaccaaagaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagt |
34841690 |
T |
|
| Q |
120 |
ggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaat |
219 |
Q |
| |
|
|||| || |||||||| || |||| ||||||||| ||| | || | ||| | ||||| || || || || || ||||| || |||||||||||||| |
|
|
| T |
34841691 |
ggatccccaacaatgttaagtcaagtgtttgtgacattgctcctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaat |
34841790 |
T |
|
| Q |
220 |
gttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggtacac |
285 |
Q |
| |
|
||| | |||||||| || || || || |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
34841791 |
gtttaggagggtgagcgagcaatttaccgctatgtttaggaggaaggctttcttgcattggtacac |
34841856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 285
Target Start/End: Complemental strand, 11732121 - 11731886
Alignment:
| Q |
50 |
atgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgttt |
149 |
Q |
| |
|
|||||||| || ||||| ||||| || ||||||||||| || ||||||||||| || ||||| || || ||||| ||||| ||||| || || | || | |
|
|
| T |
11732121 |
atgagcacaaaggaagtagatgagcagatgatcaatgtgcaaaacaagaactcttcatactttgttgagtggataccaaataatgttaagtccagcgtat |
11732022 |
T |
|
| Q |
150 |
gtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactgc |
249 |
Q |
| |
|
||||||| ||||||| || | |||||||| || || ||||| || || || || || || ||||| |||||| | || || ||||| |||||||| || |
|
|
| T |
11732021 |
gtgatatcccaccaaagggccttaagatggcatcaactttcatcggtaattcaacttcgatccaggagatgttcaggagagttagtgagcagttcacagc |
11731922 |
T |
|
| Q |
250 |
tatgttcaggagaaaggctttcttgcattggtacac |
285 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
11731921 |
tatgtttaggcgcaaggctttcttgcattggtacac |
11731886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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