View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_low_18 (Length: 280)
Name: NF4410_low_18
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 17109549 - 17109801
Alignment:
| Q |
18 |
caaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatc |
117 |
Q |
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| T |
17109549 |
caaatggaggattgtctgcacccaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatc |
17109648 |
T |
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| Q |
118 |
tctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109649 |
tctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcc |
17109748 |
T |
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| Q |
218 |
aaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctg |
270 |
Q |
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| T |
17109749 |
aaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctg |
17109801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 16978217 - 16978468
Alignment:
| Q |
18 |
caaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatc |
117 |
Q |
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|||| |||||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
16978217 |
caaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatc |
16978316 |
T |
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| Q |
118 |
tctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcc |
217 |
Q |
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||| |||||||| |||||| ||||||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || |
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| T |
16978317 |
tctttataagctatctatagatgattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctca |
16978416 |
T |
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| Q |
218 |
aaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctct |
269 |
Q |
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| T |
16978417 |
aaacttcttatcaactcgctgaaatgggctttgccgaccaatacatctctct |
16978468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 17030089 - 17030314
Alignment:
| Q |
18 |
caaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatc |
117 |
Q |
| |
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|||| |||||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
17030089 |
caaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatc |
17030188 |
T |
|
| Q |
118 |
tctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcc |
217 |
Q |
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||| |||||||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || |
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| T |
17030189 |
tctttataagctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctca |
17030288 |
T |
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| Q |
218 |
aaccttctcatcaactccctgaaatg |
243 |
Q |
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|| ||||| |||||||| ||||||| |
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| T |
17030289 |
aaacttcttatcaactcattgaaatg |
17030314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 17048427 - 17048652
Alignment:
| Q |
18 |
caaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatc |
117 |
Q |
| |
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|||| |||||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
17048427 |
caaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatc |
17048526 |
T |
|
| Q |
118 |
tctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcc |
217 |
Q |
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||| |||||||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || |
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| T |
17048527 |
tctttataagctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctca |
17048626 |
T |
|
| Q |
218 |
aaccttctcatcaactccctgaaatg |
243 |
Q |
| |
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|| ||||| |||||||| ||||||| |
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| T |
17048627 |
aaacttcttatcaactcattgaaatg |
17048652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
77 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
120 |
Q |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
77 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
120 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
77 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
120 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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