View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_low_19 (Length: 274)
Name: NF4410_low_19
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 2663508 - 2663260
Alignment:
| Q |
18 |
ccattattgaagctgcaacaaggaatttctctttttacaataagattggagaaggtggatttggtcctgtatacaaagtaaattgctatttctctttgtg |
117 |
Q |
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| T |
2663508 |
ccattattgaagctgcaacaaggaatttctctttttacaataagattggagaaggtggatttggtcctgtatacaaagtaaattgctatttctctttgtg |
2663409 |
T |
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| Q |
118 |
attattttggtcctctacacaaacatactagtgtataacaactttcttccagtaggcatgataggaaaaaattcaacaactacaattaatttaatctaaa |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2663408 |
attattttggtcctctacacaaacatactaatgtataacaactttcttccagtaggcatgataggaaaaaattcaacaactacaattaatttaatctaaa |
2663309 |
T |
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| Q |
218 |
cttttaagctttgatgt--tatttctttccaacatatttttcccctatg |
264 |
Q |
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| T |
2663308 |
cttttaagctttgatgttatatttctttccaacatattttaccactatg |
2663260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 31289640 - 31289602
Alignment:
| Q |
55 |
caataagattggagaaggtggatttggtcctgtatacaa |
93 |
Q |
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|||||||||||||||||| |||||||||||||| ||||| |
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| T |
31289640 |
caataagattggagaaggaggatttggtcctgtgtacaa |
31289602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 31382683 - 31382645
Alignment:
| Q |
55 |
caataagattggagaaggtggatttggtcctgtatacaa |
93 |
Q |
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| T |
31382683 |
caataagattggagaaggaggatttggtcctgtgtacaa |
31382645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 31242980 - 31242944
Alignment:
| Q |
57 |
ataagattggagaaggtggatttggtcctgtatacaa |
93 |
Q |
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| T |
31242980 |
ataagattggagaaggaggatttggtcctgtgtacaa |
31242944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 3079202 - 3079230
Alignment:
| Q |
65 |
ggagaaggtggatttggtcctgtatacaa |
93 |
Q |
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| T |
3079202 |
ggagaaggtggatttggtcctgtatacaa |
3079230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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